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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SingleCellMultiModal" in publications use:'
type: software
license: Artistic-2.0
title: 'SingleCellMultiModal: Integrating Multi-modal Single Cell Experiment datasets'
version: 1.17.3
doi: 10.1371/journal.pcbi.1011324
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SingleCellMultiModal
abstract: SingleCellMultiModal is an ExperimentHub package that serves multiple datasets
  obtained from GEO and other sources and represents them as MultiAssayExperiment
  objects. We provide several multi-modal datasets including scNMT, 10X Multiome,
  seqFISH, CITEseq, SCoPE2, and others. The scope of the package is is to provide
  data for benchmarking and analysis. To cite, use the 'citation' function and see
  <https://doi.org/10.1371/journal.pcbi.1011324>.
authors:
- family-names: Ramos
  given-names: Marcel
  email: marcel.ramos@roswellpark.org
  orcid: https://orcid.org/0000-0002-3242-0582
- family-names: Argelaguet
  given-names: Ricard
  email: ricard@ebi.ac.uk
- family-names: Righelli
  given-names: Dario
  email: dario.righelli@gmail.com
- family-names: Eckenrode
  given-names: Kelly
  email: kelly.eckenrode@sph.cuny.edu
- family-names: Geistlinger
  given-names: Ludwig
  email: ludwig_geistlinger@hms.harvard.edu
- family-names: Waldron
  given-names: Levi
  email: lwaldron.research@gmail.com
preferred-citation:
  type: article
  title: Curated single cell multimodal landmark datasets for R/Bioconductor
  authors:
  - family-names: Eckenrode
    given-names: Kelly B
  - family-names: Righelli
    given-names: Dario
    email: dario.righelli@gmail.com
  - family-names: Ramos
    given-names: Marcel
    orcid: https://orcid.org/0000-0002-3242-0582
    email: marcel.ramos@roswellpark.org
  - family-names: Argelaguet
    given-names: Ricard
    email: ricard@ebi.ac.uk
  - family-names: Vanderaa
    given-names: Christophe
  - family-names: Geistlinger
    given-names: Ludwig
    orcid: https://orcid.org/0000-0002-2495-5464
    email: ludwig_geistlinger@hms.harvard.edu
  - family-names: Culhane
    given-names: Aedin C
  - family-names: Gatto
    given-names: Laurent
  - family-names: Carey
    given-names: Vincent J
    orcid: https://orcid.org/0000-0003-4046-0063
  - family-names: Morgan
    given-names: Martin
    orcid: https://orcid.org/0000-0002-5874-8148
  - family-names: Risso
    given-names: Davide
  - family-names: Waldron
    given-names: Levi
    orcid: https://orcid.org/0000-0003-2725-0694
    email: lwaldron.research@gmail.com
  journal: PLoS Comput. Biol.
  year: '2023'
  volume: '19'
  issue: '8'
  doi: 10.1371/journal.pcbi.1011324
repository: https://link-ny.r-universe.dev
repository-code: https://github.com/waldronlab/SingleCellMultiModal
commit: 1ac9a1f7011596176bb7966190e9b0589a4f7981
url: https://github.com/waldronlab/SingleCellMultiModal
date-released: '2024-06-18'
contact:
- family-names: Ramos
  given-names: Marcel
  email: marcel.ramos@roswellpark.org
  orcid: https://orcid.org/0000-0002-3242-0582