{
  "_id": "6a294021732311cd875a9de5",
  "Package": "AnVILBase",
  "Title": "Generic functions for interacting with the AnVIL ecosystem",
  "Version": "1.7.0",
  "Authors@R": "c(\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\",\nc(\"aut\", \"cre\"), c(ORCID = \"0000-0002-3242-0582\")),\nperson(\"Martin\", \"Morgan\", , , c(\"aut\", \"ctb\"),\nc(ORCID = \"0000-0002-5874-8148\")),\nperson(\"NIH NHGRI U24HG004059\", role = \"fnd\")\n)",
  "Description": "Provides generic functions for interacting with the AnVIL\necosystem. Packages that use either GCP or Azure in AnVIL are\nbuilt on top of AnVILBase. Extension packages will provide\nmethods for interacting with other cloud providers.",
  "License": "Artistic-2.0",
  "biocViews": "Software, Infrastructure",
  "URL": "https://github.com/Bioconductor/AnVILBase",
  "BugReports": "https://github.com/Bioconductor/AnVILBase/issues",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Date": "2026-04-24",
  "Config/testthat/edition": "3",
  "Collate": "'AnVILBase-generics.R' 'AnVILBase-methods.R'\n'AnVILBase-package.R' 'Platform-class.R' 'Response.R'\n'avnotebooks-generics.R' 'avnotebooks-methods.R'\n'avtable-generics.R' 'avtable-methods.R'\n'avworkflow-generics.R' 'avworkflow-methods.R'\n'avworkspace-generics.R' 'avworkspace-methods.R'\n'cloud_platform.R' 'has_avworkspace-generics.R'\n'has_avworkspace-methods.R' 'utilities.R'",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://link-ny.r-universe.dev",
  "Date/Publication": "2026-04-28 13:03:22 UTC",
  "RemoteUrl": "https://github.com/Bioconductor/AnVILBase",
  "RemoteRef": "HEAD",
  "RemoteSha": "3344f923f24cfe11489a15eec059e22fcf29b663",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-10 10:41:40 UTC",
    "User": "root"
  },
  "Author": "Marcel Ramos [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3242-0582>),\nMartin Morgan [aut, ctb] (ORCID:\n<https://orcid.org/0000-0002-5874-8148>),\nNIH NHGRI U24HG004059 [fnd]",
  "Maintainer": "Marcel Ramos <marcel.ramos@sph.cuny.edu>",
  "MD5sum": "ff65e8acfbb6d244566c772a25de1a2c",
  "_user": "link-ny",
  "_type": "src",
  "_file": "AnVILBase_1.7.0.tar.gz",
  "_fileid": "6b050072cc8655a31ccac1992f5758ef3c278cf966a8dd77376ed13504e19606",
  "_filesize": 144291,
  "_sha256": "6b050072cc8655a31ccac1992f5758ef3c278cf966a8dd77376ed13504e19606",
  "_created": "2026-06-10T10:41:40.000Z",
  "_published": "2026-06-10T10:44:49.117Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 80539061659,
      "time": 145,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7533413189"
    },
    {
      "job": 80539061656,
      "time": 156,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7533416218"
    },
    {
      "job": 80539061715,
      "time": 97,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7533397118"
    },
    {
      "job": 80539061792,
      "time": 86,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7533392346"
    },
    {
      "job": 80538360296,
      "time": 249,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7533362076"
    },
    {
      "job": 80539061610,
      "time": 126,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7533406393"
    },
    {
      "job": 80539061748,
      "time": 120,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7533404424"
    },
    {
      "job": 80539061754,
      "time": 94,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7533395918"
    },
    {
      "job": 80539061702,
      "time": 110,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7533400443"
    }
  ],
  "_buildurl": "https://github.com/r-universe/link-ny/actions/runs/27270459910",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/Bioconductor/AnVILBase",
  "_commit": {
    "id": "3344f923f24cfe11489a15eec059e22fcf29b663",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381402
  },
  "_maintainer": {
    "name": "Marcel Ramos",
    "email": "marcel.ramos@sph.cuny.edu",
    "login": "link-ny",
    "bluesky": "@mramos148.bsky.social",
    "linkedin": "in/mramos148",
    "orcid": "0000-0002-3242-0582",
    "twitter": "@M2RuseR",
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \nR 📦 dev ",
    "uuid": 4392950
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.5.0",
      "role": "Depends"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "httr2",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "AnVIL",
      "role": "Suggests"
    },
    {
      "package": "AnVILAz",
      "role": "Suggests"
    },
    {
      "package": "AnVILGCP",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "GCPtools",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tinytest",
      "role": "Suggests"
    }
  ],
  "_owner": "bioconductor",
  "_selfowned": true,
  "_usedby": 17,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2025-46",
      "n": 3
    },
    {
      "week": "2026-17",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.7.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.6.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "infrastructure",
    "u24hg010263"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "link-ny",
      "count": 11,
      "uuid": 4392950
    },
    {
      "user": "jwokaty",
      "count": 8,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 4392950,
    "type": "user",
    "name": "Marcel Ramos Pérez",
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \r\nR :package: dev "
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/AnVILBase"
  },
  "_devurl": "https://github.com/bioconductor/anvilbase",
  "_searchresults": 77,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/AnVILBase.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/bioconductor/anvilbase",
  "_realowner": "bioc",
  "_cranurl": true,
  "_exports": [
    "avbackup",
    "avcopy",
    "avlist",
    "avnotebooks",
    "avnotebooks_delocalize",
    "avnotebooks_localize",
    "avplatform_namespace",
    "avremove",
    "avrestore",
    "avstop_for_status",
    "avstorage",
    "avtable",
    "avtable_delete",
    "avtable_delete_values",
    "avtable_import",
    "avtable_import_set",
    "avtables",
    "avworkflow_jobs",
    "avworkspace",
    "avworkspace_clone",
    "avworkspace_name",
    "avworkspace_namespace",
    "avworkspaces",
    "avworkspaces_clean",
    "cloud_platform",
    "flatten",
    "has_avworkspace",
    "str"
  ],
  "_help": [
    {
      "page": "AnVILBase-package",
      "title": "The AnVILBase package",
      "topics": [
        "AnVILBase-package",
        "AnVILBase"
      ]
    },
    {
      "page": "AnVILBase-generics",
      "title": "All the generics for AnVIL",
      "topics": [
        "AnVILBase-generics",
        "avbackup",
        "avcopy",
        "avlist",
        "avremove",
        "avrestore",
        "avstorage"
      ]
    },
    {
      "page": "AnVILBase-methods",
      "title": "The AnVILBase methods for 'missing' and 'ANY' signatures",
      "topics": [
        "AnVILBase-methods",
        "avbackup,ANY-method",
        "avbackup,missing-method",
        "avcopy,ANY-method",
        "avcopy,missing-method",
        "avlist,ANY-method",
        "avlist,missing-method",
        "avremove,ANY-method",
        "avremove,missing-method",
        "avrestore,ANY-method",
        "avrestore,missing-method",
        "avstorage,ANY-method",
        "avstorage,missing-method"
      ]
    },
    {
      "page": "avbase-utilities",
      "title": "Helper functions for working in AnVIL",
      "topics": [
        "avbase-utilities",
        "avstop_for_status",
        "avworkspaces_clean"
      ]
    },
    {
      "page": "avnotebooks-generics",
      "title": "All the avnotebooks generics for AnVIL",
      "topics": [
        "avnotebooks",
        "avnotebooks-generics",
        "avnotebooks_delocalize",
        "avnotebooks_localize"
      ]
    },
    {
      "page": "avnotebooks-methods",
      "title": "All the notebook type methods for AnVIL",
      "topics": [
        "avnotebooks,ANY-method",
        "avnotebooks,missing-method",
        "avnotebooks-methods",
        "avnotebooks_delocalize,ANY-method",
        "avnotebooks_delocalize,missing-method",
        "avnotebooks_localize,ANY-method",
        "avnotebooks_localize,missing-method"
      ]
    },
    {
      "page": "avtable-generics",
      "title": "All the table type generics for AnVIL",
      "topics": [
        "avtable",
        "avtable-generics",
        "avtables",
        "avtable_delete",
        "avtable_delete_values",
        "avtable_import",
        "avtable_import_set"
      ]
    },
    {
      "page": "avtable-methods",
      "title": "The avtable methods for 'missing' and 'ANY' signatures",
      "topics": [
        "avtable,ANY-method",
        "avtable,missing-method",
        "avtable-methods",
        "avtables,ANY-method",
        "avtables,missing-method",
        "avtable_delete,ANY-method",
        "avtable_delete,missing-method",
        "avtable_delete_values,ANY-method",
        "avtable_delete_values,missing-method",
        "avtable_import,ANY-method",
        "avtable_import,missing-method",
        "avtable_import_set,ANY-method",
        "avtable_import_set,missing-method"
      ]
    },
    {
      "page": "avworkflow-generics",
      "title": "All the workflow type generics for AnVIL",
      "topics": [
        "avworkflow-generics",
        "avworkflow_jobs"
      ]
    },
    {
      "page": "avworkflow-methods",
      "title": "All the workflow type methods for AnVIL",
      "topics": [
        "avworkflow-methods",
        "avworkflow_jobs,ANY-method",
        "avworkflow_jobs,missing-method"
      ]
    },
    {
      "page": "avworkspace-generics",
      "title": "All the table type generics for AnVIL",
      "topics": [
        "avworkspace",
        "avworkspace-generics",
        "avworkspaces",
        "avworkspace_clone",
        "avworkspace_name",
        "avworkspace_namespace"
      ]
    },
    {
      "page": "avworkspace-methods",
      "title": "The 'avworkspace' methods for 'missing' and 'ANY' signatures",
      "topics": [
        "avworkspace,ANY-method",
        "avworkspace,missing-method",
        "avworkspace-methods",
        "avworkspaces,ANY-method",
        "avworkspaces,missing-method",
        "avworkspace_clone,ANY-method",
        "avworkspace_clone,missing-method",
        "avworkspace_name,ANY-method",
        "avworkspace_name,missing-method",
        "avworkspace_namespace,ANY-method",
        "avworkspace_namespace,missing-method"
      ]
    },
    {
      "page": "cloud_platform",
      "title": "Cloud Platform Identifier",
      "topics": [
        "avplatform_namespace",
        "cloud_platform"
      ]
    },
    {
      "page": "has_avworkspace-generics",
      "title": "The generic for checking if the user is within an environment",
      "topics": [
        "has_avworkspace",
        "has_avworkspace-generics"
      ]
    },
    {
      "page": "has_avworkspace-methods",
      "title": "The 'has_avworkspace' methods for 'missing' and 'ANY' signatures.",
      "topics": [
        "has_avworkspace,ANY-method",
        "has_avworkspace,missing-method",
        "has_avworkspace-methods"
      ]
    },
    {
      "page": "Platform-class",
      "title": "Virtual Class for Platform",
      "topics": [
        ".Platform",
        "Platform-class"
      ]
    },
    {
      "page": "Response",
      "title": "Process service responses to tibble and other data structures.",
      "topics": [
        "as.list.response",
        "flatten",
        "flatten,httr2_response-method",
        "flatten,response-method",
        "Response",
        "str,response-method"
      ]
    }
  ],
  "_rundeps": [
    "askpass",
    "cli",
    "curl",
    "dplyr",
    "generics",
    "glue",
    "httr",
    "httr2",
    "jsonlite",
    "lifecycle",
    "magrittr",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "R6",
    "rappdirs",
    "rlang",
    "sys",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "AnVILBaseIntroduction.Rmd",
      "filename": "AnVILBaseIntroduction.html",
      "title": "Introduction to AnVILBase",
      "author": "Bioconductor AnVIL SIG",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Introduction",
        "Overview",
        "Cloud Platforms",
        "Developer Note",
        "Base generics",
        "Table generics",
        "Workspace generics",
        "Workflow generics",
        "Notebook generics",
        "sessionInfo"
      ],
      "created": "2024-03-08 15:51:06",
      "modified": "2024-07-02 16:22:29",
      "commits": 5
    }
  ],
  "_score": 6.196120892598381,
  "_indexed": false,
  "_nocasepkg": "anvilbase",
  "_universes": [
    "link-ny"
  ],
  "_indexurl": "https://bioc.r-universe.dev/AnVILBase",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.7.0",
      "date": "2026-06-10T10:44:08.000Z",
      "distro": "noble",
      "commit": "3344f923f24cfe11489a15eec059e22fcf29b663",
      "fileid": "e359fecc602e2e36879a3f580e2359435cc1043f3ace9413a0ca8213666650e6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/27270459910"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.7.0",
      "date": "2026-06-10T10:44:15.000Z",
      "distro": "noble",
      "commit": "3344f923f24cfe11489a15eec059e22fcf29b663",
      "fileid": "553d17fba447749296f55d4648335d5c07f98714a8889f3cc516b281631e3e78",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/27270459910"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.7.0",
      "date": "2026-06-10T10:43:24.000Z",
      "commit": "3344f923f24cfe11489a15eec059e22fcf29b663",
      "fileid": "7cd6c85b6c4f5a5f585fe1b118c0d70cb21d5a508087d8a47a0fb666cc3c7cff",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/27270459910"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.7.0",
      "date": "2026-06-10T10:43:09.000Z",
      "commit": "3344f923f24cfe11489a15eec059e22fcf29b663",
      "fileid": "e0af9be16bf2a24ea4bb999a68684803279abe74295f051dd46275d57f115e17",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/27270459910"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.7.0",
      "date": "2026-06-10T10:44:05.000Z",
      "commit": "3344f923f24cfe11489a15eec059e22fcf29b663",
      "fileid": "ea499699b485674c97bcd3b83663aec6b892935a2d0189222c9efc2bd5069b04",
      "status": "success",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/27270459910"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-06-10T10:43:28.000Z",
      "commit": "3344f923f24cfe11489a15eec059e22fcf29b663",
      "fileid": "6749b5aa9fd24e832d4d2c11278025df9998c7ebf7c583ba7a88d02f904ea981",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/27270459910"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-06-10T10:43:12.000Z",
      "commit": "3344f923f24cfe11489a15eec059e22fcf29b663",
      "fileid": "745830bf339ae8221f1395bca28c93c0b93daa34830c27eea01418bf5c2d963b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/27270459910"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-06-10T10:43:00.000Z",
      "commit": "3344f923f24cfe11489a15eec059e22fcf29b663",
      "fileid": "e3e7175ea0af1382661ac5e8aeb650ff36cd6b18ac81e2e97ad2fe310011d317",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/27270459910"
    }
  ]
}