{
  "_id": "6a1bce1d1d7bb097a0a13e0a",
  "Package": "AnVILGCP",
  "Title": "The GCP R Client for the AnVIL",
  "Version": "1.7.3",
  "Date": "2026-05-22",
  "Authors@R": "c(\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\",\nc(\"aut\", \"cre\"), c(ORCID = \"0000-0002-3242-0582\")\n),\nperson(\"Nitesh\", \"Turaga\", , , \"aut\"),\nperson(\"Martin\", \"Morgan\", , , \"aut\", c(ORCID = \"0000-0002-5874-8148\"))\n)",
  "Description": "The package provides a set of functions to interact with\nthe Google Cloud Platform (GCP) services on the AnVIL platform.\nThe package is designed to use the API calls from the AnVIL\npackage. It coordinates AnVIL workspace functionality with\nnative GCP tools.",
  "biocViews": "Software, Infrastructure, ThirdPartyClient, DataImport",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/Bioconductor/AnVILGCP/issues",
  "URL": "https://github.com/Bioconductor/AnVILGCP",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Collate": "'av.R' 'avdata.R' 'gcp-class.R' 'avnotebooks-methods.R'\n'avtable-methods.R' 'avworkflow-methods.R' 'avworkflow.R'\n'avworkflow_configuration.R' 'avworkspace-methods.R' 'drs.R'\n'gcloud_sdk.R' 'gcp-methods.R' 'gsutil.R'\n'has_avworkspace-methods.R' 'localize.R' 'utilities.R'",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "libicu-dev libssl-dev",
  "Repository": "https://link-ny.r-universe.dev",
  "Date/Publication": "2026-05-22 21:14:41 UTC",
  "RemoteUrl": "https://github.com/Bioconductor/AnVILGCP",
  "RemoteRef": "HEAD",
  "RemoteSha": "d52ab2e170f7a23b70627347384e672cdaf94e67",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-29 09:02:54 UTC",
    "User": "root"
  },
  "Author": "Marcel Ramos [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3242-0582>),\nNitesh Turaga [aut],\nMartin Morgan [aut] (ORCID: <https://orcid.org/0000-0002-5874-8148>)",
  "Maintainer": "Marcel Ramos <marcel.ramos@sph.cuny.edu>",
  "MD5sum": "2d6270f3d376b796f14b5cb660e458ff",
  "_user": "link-ny",
  "_type": "src",
  "_file": "AnVILGCP_1.7.3.tar.gz",
  "_fileid": "8a2f90395de5bc7b6a48cf56cde754ad6a5d2a9428c1ddf9cc2b1c2368ccff20",
  "_filesize": 383447,
  "_sha256": "8a2f90395de5bc7b6a48cf56cde754ad6a5d2a9428c1ddf9cc2b1c2368ccff20",
  "_created": "2026-05-29T09:02:54.000Z",
  "_published": "2026-05-31T05:58:53.124Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78703871565,
      "time": 145,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7287093155"
    },
    {
      "job": 78703871628,
      "time": 144,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7287092885"
    },
    {
      "job": 78703871473,
      "time": 68,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 78703871553,
      "time": 96,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7288922554"
    },
    {
      "job": 78703871464,
      "time": 233,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7287047197"
    },
    {
      "job": 78703871558,
      "time": 117,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7287084416"
    },
    {
      "job": 78703871557,
      "time": 97,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7287078578"
    },
    {
      "job": 78703871487,
      "time": 21,
      "config": "windows-oldrel",
      "r": "",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 78703871601,
      "time": 100,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7287079153"
    }
  ],
  "_buildurl": "https://github.com/r-universe/link-ny/actions/runs/26628207662",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/Bioconductor/AnVILGCP",
  "_commit": {
    "id": "d52ab2e170f7a23b70627347384e672cdaf94e67",
    "author": "LiNk-NY <marcel.ramos@sph.cuny.edu>",
    "committer": "LiNk-NY <marcel.ramos@sph.cuny.edu>",
    "message": "version bump 1.7.3\n",
    "time": 1779484481
  },
  "_maintainer": {
    "name": "Marcel Ramos",
    "email": "marcel.ramos@sph.cuny.edu",
    "login": "link-ny",
    "bluesky": "@mramos148.bsky.social",
    "linkedin": "in/mramos148",
    "orcid": "0000-0002-3242-0582",
    "twitter": "@M2RuseR",
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \nR 📦 dev ",
    "uuid": 4392950
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.6.0",
      "role": "Depends"
    },
    {
      "package": "AnVILBase",
      "role": "Imports"
    },
    {
      "package": "BiocBaseUtils",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "GCPtools",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "AnVIL",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    }
  ],
  "_owner": "bioconductor",
  "_selfowned": true,
  "_usedby": 5,
  "_updates": [
    {
      "week": "2025-22",
      "n": 3
    },
    {
      "week": "2025-24",
      "n": 3
    },
    {
      "week": "2025-28",
      "n": 11
    },
    {
      "week": "2025-29",
      "n": 6
    },
    {
      "week": "2025-39",
      "n": 6
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2025-45",
      "n": 2
    },
    {
      "week": "2025-46",
      "n": 4
    },
    {
      "week": "2026-17",
      "n": 3
    },
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-21",
      "n": 15
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.7.3",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.6.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "infrastructure",
    "thirdpartyclient",
    "dataimport",
    "u24hg010263"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "link-ny",
      "count": 74,
      "uuid": 4392950
    },
    {
      "user": "jwokaty",
      "count": 8,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 4392950,
    "type": "user",
    "name": "Marcel Ramos Pérez",
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \r\nR :package: dev "
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/AnVILGCP"
  },
  "_devurl": "https://github.com/bioconductor/anvilgcp",
  "_searchresults": 39,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/AnVILGCP.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/bioconductor/anvilgcp",
  "_realowner": "bioc",
  "_cranurl": true,
  "_exports": [
    "avbackup",
    "avcopy",
    "avdata",
    "avdata_import",
    "avdisks",
    "avfiles_backup",
    "avfiles_ls",
    "avfiles_restore",
    "avfiles_rm",
    "avlist",
    "avnotebooks",
    "avnotebooks_delocalize",
    "avnotebooks_localize",
    "avremove",
    "avrestore",
    "avruntime",
    "avruntimes",
    "avstorage",
    "avtable",
    "avtable_delete",
    "avtable_delete_values",
    "avtable_import",
    "avtable_import_set",
    "avtable_import_status",
    "avtable_paged",
    "avtables",
    "avworkflow",
    "avworkflow_configuration_get",
    "avworkflow_configuration_inputs",
    "avworkflow_configuration_outputs",
    "avworkflow_configuration_set",
    "avworkflow_configuration_template",
    "avworkflow_configuration_update",
    "avworkflow_files",
    "avworkflow_info",
    "avworkflow_jobs",
    "avworkflow_localize",
    "avworkflow_name",
    "avworkflow_namespace",
    "avworkflow_run",
    "avworkflow_stop",
    "avworkflows",
    "avworkspace",
    "avworkspace_clone",
    "avworkspace_name",
    "avworkspace_namespace",
    "avworkspaces",
    "delocalize",
    "drs_hub",
    "drs_nci_crdc",
    "gcp",
    "gsutil_cat",
    "gsutil_exists",
    "gsutil_help",
    "gsutil_pipe",
    "gsutil_requesterpays",
    "gsutil_rsync",
    "gsutil_stat",
    "has_avworkspace",
    "localize"
  ],
  "_help": [
    {
      "page": "av",
      "title": "Miscellaneous functions for interacting with AnVIL tables and files",
      "topics": [
        "av",
        "avdisks",
        "avfiles_backup",
        "avfiles_ls",
        "avfiles_restore",
        "avfiles_rm",
        "avruntime",
        "avruntimes",
        "avtable_import_status",
        "avtable_paged"
      ]
    },
    {
      "page": "avdata",
      "title": "Import data into the current workspace",
      "topics": [
        "avdata",
        "avdata_import"
      ]
    },
    {
      "page": "avnotebooks-methods",
      "title": "Notebook management",
      "topics": [
        "avnotebooks",
        "avnotebooks,gcp-method",
        "avnotebooks-methods",
        "avnotebooks_delocalize",
        "avnotebooks_delocalize,gcp-method",
        "avnotebooks_localize",
        "avnotebooks_localize,gcp-method"
      ]
    },
    {
      "page": "avtable-methods",
      "title": "Methods that work with the primary datasets in the DATA tab",
      "topics": [
        "avtable",
        "avtable,gcp-method",
        "avtable-methods",
        "avtables",
        "avtables,gcp-method",
        "avtable_delete,gcp-method",
        "avtable_delete_values",
        "avtable_delete_values,gcp-method",
        "avtable_import",
        "avtable_import,gcp-method",
        "avtable_import_set",
        "avtable_import_set,gcp-method"
      ]
    },
    {
      "page": "avworkflow_configuration",
      "title": "Workflow configuration",
      "topics": [
        "avworkflow",
        "avworkflow_configurations",
        "avworkflow_configuration_get",
        "avworkflow_configuration_inputs",
        "avworkflow_configuration_outputs",
        "avworkflow_configuration_set",
        "avworkflow_configuration_template",
        "avworkflow_configuration_update",
        "avworkflow_name",
        "avworkflow_namespace",
        "print.avworkflow_configuration"
      ]
    },
    {
      "page": "avworkflow-methods",
      "title": "AnVIL workflow methods",
      "topics": [
        "avworkflow-methods",
        "avworkflow_jobs,gcp-method"
      ]
    },
    {
      "page": "avworkflow",
      "title": "Workflow submissions and file outputs",
      "topics": [
        "avworkflows",
        "avworkflow_files",
        "avworkflow_info",
        "avworkflow_localize",
        "avworkflow_run",
        "avworkflow_stop"
      ]
    },
    {
      "page": "avworkspace-methods",
      "title": "AnVIL Workspace GCP methods",
      "topics": [
        "avworkspace,gcp-method",
        "avworkspace-methods",
        "avworkspaces,gcp-method",
        "avworkspace_clone,gcp-method",
        "avworkspace_name,gcp-method",
        "avworkspace_namespace,gcp-method"
      ]
    },
    {
      "page": "drs",
      "title": "DRS (Data Repository Service) URL management",
      "topics": [
        "drs",
        "drs_hub",
        "drs_nci_crdc"
      ]
    },
    {
      "page": "gcp-class",
      "title": "GCP platform class",
      "topics": [
        ".gcp",
        "gcp",
        "gcp-class"
      ]
    },
    {
      "page": "gcp-methods",
      "title": "Methods compatible with the GCP platform class",
      "topics": [
        "avbackup",
        "avbackup,gcp-method",
        "avcopy",
        "avcopy,gcp-method",
        "avlist",
        "avlist,gcp-method",
        "avremove",
        "avremove,gcp-method",
        "avrestore",
        "avrestore,gcp-method",
        "avstorage",
        "avstorage,gcp-method",
        "gcp-methods"
      ]
    },
    {
      "page": "gsutil-defunct",
      "title": "gsutil command line utility interface (DEFUNCT)",
      "topics": [
        "gsutil-defunct",
        "gsutil_cat",
        "gsutil_exists",
        "gsutil_help",
        "gsutil_pipe",
        "gsutil_requesterpays",
        "gsutil_rsync",
        "gsutil_stat"
      ]
    },
    {
      "page": "has_avworkspace-methods",
      "title": "Helper to check AnVIL environment is set up to work with GCP",
      "topics": [
        "has_avworkspace,gcp-method",
        "has_avworkspace-methods"
      ]
    },
    {
      "page": "localize",
      "title": "Copy packages, folders, or files to or from google buckets.",
      "topics": [
        "delocalize",
        "localize"
      ]
    }
  ],
  "_rundeps": [
    "AnVILBase",
    "askpass",
    "BiocBaseUtils",
    "cli",
    "cpp11",
    "curl",
    "dplyr",
    "GCPtools",
    "generics",
    "glue",
    "httr",
    "httr2",
    "jsonlite",
    "lifecycle",
    "magrittr",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "rlang",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "AnVILGCPIntroduction.Rmd",
      "filename": "AnVILGCPIntroduction.html",
      "title": "Working with AnVIL on GCP",
      "author": "Nitesh Turaga, Vincent Carey, BJ Stubbs, Marcel Ramos, Martin Morgan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Additional Setup",
        "Use in the AnVIL cloud",
        "Local use",
        "Graphical interfaces",
        "Working with Google cloud-based resources",
        "Using gcloud_*() for account management",
        "Using gsutil_*() for file and bucket management",
        "Using av*() to work with AnVIL tables and data",
        "Tables, reference data, and persistent files",
        "Using avtable*() for accessing tables",
        "Using avdata() for accessing Workspace Data",
        "Using avstorage() and  workspace files",
        "Using avnotebooks*() for notebook management",
        "Using avworkflows_*() for workflows",
        "Using avworkspace_*() for workspaces",
        "Session Info"
      ],
      "created": "2024-03-28 21:34:53",
      "modified": "2026-05-22 21:12:51",
      "commits": 10
    }
  ],
  "_score": 5.808548551240405,
  "_indexed": false,
  "_nocasepkg": "anvilgcp",
  "_universes": [
    "link-ny"
  ],
  "_indexurl": "https://bioc.r-universe.dev/AnVILGCP",
  "_binaries": [
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.7.1",
      "date": "2026-05-22T20:39:38.000Z",
      "commit": "02c6068e244357badc4593d8a07d0e885e39c115",
      "fileid": "dfee0e9fdb00a1297afb56fe8bb2e93157763f72be6b0175f8b4ebb5b0e2ead4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/26310647230"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.7.1",
      "date": "2026-05-22T20:39:14.000Z",
      "commit": "02c6068e244357badc4593d8a07d0e885e39c115",
      "fileid": "9c415d1aad105c793eec7220bbfb69f6b999859e1a2d0d5a6d05c0ca39304986",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/26310647230"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.7.3",
      "date": "2026-05-29T09:05:20.000Z",
      "distro": "noble",
      "commit": "d52ab2e170f7a23b70627347384e672cdaf94e67",
      "fileid": "60a9439435baa09bb6b48fc6a3550c9a7c0274ff97bca6c41c571295d37d0fa4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/26628207662"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.7.3",
      "date": "2026-05-29T09:05:19.000Z",
      "distro": "noble",
      "commit": "d52ab2e170f7a23b70627347384e672cdaf94e67",
      "fileid": "8b8fe9d891f4aa14ba165813da09cfac5a7bebc316d300e1160d1cba590e7b1e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/26628207662"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.7.3",
      "date": "2026-05-29T10:48:43.000Z",
      "commit": "d52ab2e170f7a23b70627347384e672cdaf94e67",
      "fileid": "041f6a01131c237f26e5618cee1f6e6b797cfacc770ee7b3e8e952dbd83eff4d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/26628207662"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.7.3",
      "date": "2026-05-29T09:05:15.000Z",
      "commit": "d52ab2e170f7a23b70627347384e672cdaf94e67",
      "fileid": "71666df23a42df7bf0a8ea9d0b94500403dd2faf4e73ddb44438daf2208bfe5e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/26628207662"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.7.3",
      "date": "2026-05-29T09:04:29.000Z",
      "commit": "d52ab2e170f7a23b70627347384e672cdaf94e67",
      "fileid": "fbba7c4566dcd8a755a3b279494fb0ec6a2aa3e72d936ec38760d09ae71a540d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/26628207662"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.7.3",
      "date": "2026-05-29T09:04:28.000Z",
      "commit": "d52ab2e170f7a23b70627347384e672cdaf94e67",
      "fileid": "3fa8e81458739c57508406b2de02150eb4b45568387df8516720b85769ff36ae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/26628207662"
    }
  ]
}