{
  "_id": "6ab4c2ea3d719c1f8409581c",
  "Package": "BiocBaseUtils",
  "Title": "Utility and internal functions for Bioconductor packages",
  "Version": "1.15.1",
  "Authors@R": "c(\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\",\nc(\"aut\", \"cre\"), c(ORCID = \"0000-0002-3242-0582\")\n),\nperson(\"Martin\", \"Morgan\", , \"martin.morgan@roswellpark.org\", \"ctb\"\n),\nperson(\"Hervé\", \"Pagès\", , \"hpages.on.github@gmail.com\", \"ctb\")\n)",
  "Description": "The package coalesces typical helper functions that are\nscattered throughout the Bioconductor ecosystem. It aims to\nreduce code redundancy by formalizing functions often used by\nBioconductor developers. These functions include operations\nsuch as replacing slots in an object, selecting observations\nfor show methods, labeling function life cycles, and more.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "biocViews": "Software, Infrastructure",
  "BugReports": "https://www.github.com/Bioconductor/BiocBaseUtils/issues",
  "URL": "https://www.github.com/Bioconductor/BiocBaseUtils",
  "Roxygen": "list(markdown = TRUE)",
  "VignetteBuilder": "knitr",
  "Date": "2026-05-08",
  "Config/roxygen2/version": "8.0.0",
  "Repository": "https://link-ny.r-universe.dev",
  "Date/Publication": "2026-05-08 19:19:30 UTC",
  "RemoteUrl": "https://github.com/Bioconductor/BiocBaseUtils",
  "RemoteRef": "HEAD",
  "RemoteSha": "79c6f035cdbe36070ca03ec8c8a32e45e5bd9abb",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-22 09:54:14 UTC",
    "User": "root"
  },
  "Author": "Marcel Ramos [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3242-0582>),\nMartin Morgan [ctb],\nHervé Pagès [ctb]",
  "Maintainer": "Marcel Ramos <marcel.ramos@sph.cuny.edu>",
  "_user": "link-ny",
  "_type": "src",
  "_file": "BiocBaseUtils_1.15.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/3d12f74d8e11e0e4e0a5b52ffec801edc482fc7fa4f2c787ddd22442295b58c3",
  "_filesize": 115084,
  "_sha256": "3d12f74d8e11e0e4e0a5b52ffec801edc482fc7fa4f2c787ddd22442295b58c3",
  "_expires": "2026-12-31T09:56:52.000Z",
  "_created": "2026-09-22T09:54:14.000Z",
  "_published": "2026-09-24T06:27:54.135Z",
  "_jobs": [
    {
      "job": 107519939330,
      "time": 119,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10688360774"
    },
    {
      "job": 107519939732,
      "time": 120,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10688255802"
    },
    {
      "job": 107519938100,
      "time": 70,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 107519939060,
      "time": 75,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10687770608"
    },
    {
      "job": 107519938867,
      "time": 177,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10687273815"
    },
    {
      "job": 107519939472,
      "time": 95,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10688305732"
    },
    {
      "job": 107519939713,
      "time": 66,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10687815360"
    },
    {
      "job": 107519938281,
      "time": 43,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 107519939793,
      "time": 93,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10687560767"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/link-ny/actions/runs/35712707643",
  "_status": "success",
  "_upstream": "https://github.com/Bioconductor/BiocBaseUtils",
  "_commit": {
    "id": "79c6f035cdbe36070ca03ec8c8a32e45e5bd9abb",
    "author": "LiNk-NY <LiNk-NY@users.noreply.github.com>",
    "committer": "LiNk-NY <marcel.ramos@sph.cuny.edu>",
    "message": "Re-build README.md file\n\n- add render chunk to README.Rmd\n",
    "time": 1778267970
  },
  "_maintainer": {
    "name": "Marcel Ramos",
    "email": "marcel.ramos@sph.cuny.edu",
    "login": "link-ny",
    "bluesky": "@mramos148.bsky.social",
    "linkedin": "in/mramos148",
    "orcid": "0000-0002-3242-0582",
    "twitter": "@M2RuseR",
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \nR 📦 dev ",
    "uuid": 4392950
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.6.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "tinytest",
      "role": "Suggests"
    }
  ],
  "_owner": "bioconductor",
  "_selfowned": true,
  "_usedby": 1086,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-19",
      "n": 11
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.15.1",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.14.2",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "infrastructure",
    "bioconductor-package",
    "core-package"
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "link-ny",
      "count": 23,
      "uuid": 4392950
    },
    {
      "user": "jwokaty",
      "count": 16,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 4392950,
    "type": "user",
    "name": "Marcel Ramos Pérez",
    "followers": 124,
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \r\nR :package: dev "
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BiocBaseUtils"
  },
  "_devurl": "https://github.com/bioconductor/biocbaseutils",
  "_searchresults": 11,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/BiocBaseUtils.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/bioconductor/biocbaseutils",
  "_realowner": "bioc",
  "_cranurl": true,
  "_exports": [
    "askUserYesNo",
    "checkInstalled",
    "isCharacter",
    "isScalarCharacter",
    "isScalarInteger",
    "isScalarLogical",
    "isScalarNumber",
    "isTRUEorFALSE",
    "isZeroOneCharacter",
    "lifeCycle",
    "selectSome",
    "setSlots"
  ],
  "_help": [
    {
      "page": "askUserYesNo",
      "title": "Ask user for a yes/no response",
      "topics": [
        "askUserYesNo"
      ]
    },
    {
      "page": "Assertions",
      "title": "Suite of helper functions to test for types",
      "topics": [
        "Assertions",
        "isCharacter",
        "isScalarCharacter",
        "isScalarInteger",
        "isScalarLogical",
        "isScalarNumber",
        "isTRUEorFALSE",
        "isZeroOneCharacter"
      ]
    },
    {
      "page": "checkInstalled",
      "title": "Check packages are installed otherwise suggest",
      "topics": [
        "checkInstalled"
      ]
    },
    {
      "page": "lifeCycle",
      "title": "Set the life cycle stage of a function",
      "topics": [
        "lifeCycle"
      ]
    },
    {
      "page": "selectSome",
      "title": "Select and return only some entries from a vector",
      "topics": [
        "selectSome"
      ]
    },
    {
      "page": "setSlots",
      "title": "Convenience function to set slot values",
      "topics": [
        "replaceSlots",
        "setSlots"
      ]
    }
  ],
  "_readme": "https://github.com/Bioconductor/BiocBaseUtils/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "BiocBaseUtils.Rmd",
      "filename": "BiocBaseUtils.html",
      "title": "BiocBaseUtils Quick Start",
      "author": "Bioconductor Core Team",
      "engine": "knitr::rmarkdown",
      "headings": [
        "BiocBaseUtils",
        "Installation",
        "Load Package",
        "Assertions",
        "Logical",
        "Character",
        "Numeric",
        "Slot replacement",
        "show method",
        "Contributing",
        "Session Info"
      ],
      "created": "2022-08-18 19:25:58",
      "modified": "2026-05-08 19:02:27",
      "commits": 3
    }
  ],
  "_score": 8.33249501551436,
  "_indexed": false,
  "_nocasepkg": "biocbaseutils",
  "_universes": [
    "link-ny"
  ],
  "_indexurl": "https://bioc.r-universe.dev/BiocBaseUtils",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.15.1",
      "date": "2026-09-22T09:56:21.000Z",
      "distro": "resolute",
      "commit": "79c6f035cdbe36070ca03ec8c8a32e45e5bd9abb",
      "fileid": "https://r2.ropensci.org/edf54b41aa2f406d9d5ecba24be0b232eca2de88e1fe44261fe4c7f65b6fa084",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/35712707643"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.15.1",
      "date": "2026-09-22T09:56:23.000Z",
      "distro": "resolute",
      "commit": "79c6f035cdbe36070ca03ec8c8a32e45e5bd9abb",
      "fileid": "https://r2.ropensci.org/68a15c9847c67c306fb1fb6d7909a99126ea33e0886b9732f6aeead730a1056d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/35712707643"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.15.1",
      "date": "2026-09-22T09:56:21.000Z",
      "commit": "79c6f035cdbe36070ca03ec8c8a32e45e5bd9abb",
      "fileid": "https://r2.ropensci.org/41089cefa550c31a7a2037a750decc43c9df7347f7c0160459a241ca311714f8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/35712707643"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.15.1",
      "date": "2026-09-22T09:56:09.000Z",
      "commit": "79c6f035cdbe36070ca03ec8c8a32e45e5bd9abb",
      "fileid": "https://r2.ropensci.org/726117f7590f35b15c8d3dab5fb378b6536f7993d1bcc99319f87029421e20e2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/35712707643"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.15.1",
      "date": "2026-09-22T09:55:21.000Z",
      "commit": "79c6f035cdbe36070ca03ec8c8a32e45e5bd9abb",
      "fileid": "https://r2.ropensci.org/66be21b80e78f1d05849ec2e292a042b78c64b961b2453b116380e6e44a5781e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/35712707643"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.15.1",
      "date": "2026-09-22T09:55:53.000Z",
      "commit": "79c6f035cdbe36070ca03ec8c8a32e45e5bd9abb",
      "fileid": "https://r2.ropensci.org/3ca29caa2d8544353b2ae169731fde0d7e3f42aa27cec5d8c2854478c2d6a20b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/35712707643"
    }
  ]
}