{
  "_id": "6abd6e4599f7aa8c6aa50380",
  "Package": "BiocCheck",
  "Title": "Bioconductor-specific package checks",
  "Version": "1.49.32",
  "Date": "2026-07-27",
  "Authors@R": "c(\nperson(\"Bioconductor\", \"Package Maintainer\", ,\n\"maintainer@bioconductor.org\", \"aut\"),\nperson(\"Lori\", \"Shepherd\", role = \"aut\"),\nperson(\"Daniel\", \"von Twisk\", role = \"ctb\"),\nperson(\"Kevin\", \"Rue\", role = \"ctb\"),\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\",\nc(\"aut\", \"cre\"), c(ORCID = \"0000-0002-3242-0582\")),\nperson(\"Leonardo\", \"Collado-Torres\", role = \"ctb\"),\nperson(\"Federico\", \"Marini\", role = \"ctb\")\n)",
  "Description": "BiocCheck guides maintainers through Bioconductor best\npracticies. It runs Bioconductor-specific package checks by\nsearching through package code, examples, and vignettes.\nMaintainers are required to address all errors, warnings, and\nmost notes produced.",
  "License": "Artistic-2.0",
  "URL": "https://github.com/Bioconductor/BiocCheck",
  "BugReports": "https://github.com/Bioconductor/BiocCheck/issues",
  "VignetteBuilder": "knitr",
  "biocViews": "Infrastructure",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "make libicu-dev libxml2-dev libssl-dev",
  "Repository": "https://link-ny.r-universe.dev",
  "Date/Publication": "2026-09-30 19:18:46 UTC",
  "RemoteUrl": "https://github.com/Bioconductor/BiocCheck",
  "RemoteRef": "HEAD",
  "RemoteSha": "28c6e9438e005dd6af104f1e89703ac5f3e2ef0f",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-30 19:58:00 UTC",
    "User": "root"
  },
  "Author": "Bioconductor Package Maintainer [aut],\nLori Shepherd [aut],\nDaniel von Twisk [ctb],\nKevin Rue [ctb],\nMarcel Ramos [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3242-0582>),\nLeonardo Collado-Torres [ctb],\nFederico Marini [ctb]",
  "Maintainer": "Marcel Ramos <marcel.ramos@sph.cuny.edu>",
  "_user": "link-ny",
  "_type": "src",
  "_file": "BiocCheck_1.49.32.tar.gz",
  "_fileid": "https://r2.ropensci.org/5a9251f223e4bac27e7064ffe511dd1fe99a5cf0ee45b76d029f927a7f532bf9",
  "_filesize": 231589,
  "_sha256": "5a9251f223e4bac27e7064ffe511dd1fe99a5cf0ee45b76d029f927a7f532bf9",
  "_expires": "2027-01-08T20:17:04.000Z",
  "_created": "2026-09-30T19:58:00.000Z",
  "_published": "2026-09-30T20:17:07.158Z",
  "_jobs": [
    {
      "job": 110071565771,
      "time": 331,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11123283990"
    },
    {
      "job": 110071565585,
      "time": 326,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11123213889"
    },
    {
      "job": 110071565643,
      "time": 194,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11124211234"
    },
    {
      "job": 110071565674,
      "time": 288,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11123361796"
    },
    {
      "job": 110069801520,
      "time": 271,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11121834102"
    },
    {
      "job": 110071565599,
      "time": 165,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11121634718"
    },
    {
      "job": 110071565586,
      "time": 273,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11122799030"
    },
    {
      "job": 110071565685,
      "time": 255,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11121749873"
    },
    {
      "job": 110071565660,
      "time": 287,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11123540006"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/link-ny/actions/runs/36768818081",
  "_status": "success",
  "_upstream": "https://github.com/Bioconductor/BiocCheck",
  "_commit": {
    "id": "28c6e9438e005dd6af104f1e89703ac5f3e2ef0f",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "Closes #259\n\n - Tarballs now have appropriate package size and individual file size check\n - Improves message when package size is skipped on open directory indicating limit\n",
    "time": 1790795926
  },
  "_maintainer": {
    "name": "Marcel Ramos",
    "email": "marcel.ramos@sph.cuny.edu",
    "login": "link-ny",
    "bluesky": "@mramos148.bsky.social",
    "linkedin": "in/mramos148",
    "orcid": "0000-0002-3242-0582",
    "twitter": "@M2RuseR",
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \nR 📦 dev ",
    "uuid": 4392950
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4.0",
      "role": "Depends"
    },
    {
      "package": "BiocBaseUtils",
      "role": "Imports"
    },
    {
      "package": "BiocFileCache",
      "role": "Imports"
    },
    {
      "package": "BiocManager",
      "role": "Imports"
    },
    {
      "package": "biocViews",
      "role": "Imports"
    },
    {
      "package": "callr",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "codetools",
      "role": "Imports"
    },
    {
      "package": "commonmark",
      "role": "Imports"
    },
    {
      "package": "graph",
      "role": "Imports"
    },
    {
      "package": "httr2",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "rvest",
      "role": "Imports"
    },
    {
      "package": "stringdist",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "xml2",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "curl",
      "role": "Suggests"
    },
    {
      "package": "devtools",
      "role": "Suggests"
    },
    {
      "package": "gert",
      "role": "Suggests"
    },
    {
      "package": "jsonlite",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "tinytest",
      "role": "Suggests"
    },
    {
      "package": "usethis",
      "role": "Suggests"
    }
  ],
  "_owner": "bioconductor",
  "_selfowned": true,
  "_usedby": 5,
  "_updates": [
    {
      "week": "2025-42",
      "n": 4
    },
    {
      "week": "2025-44",
      "n": 3
    },
    {
      "week": "2025-45",
      "n": 6
    },
    {
      "week": "2025-47",
      "n": 17
    },
    {
      "week": "2025-50",
      "n": 4
    },
    {
      "week": "2026-01",
      "n": 3
    },
    {
      "week": "2026-03",
      "n": 8
    },
    {
      "week": "2026-04",
      "n": 10
    },
    {
      "week": "2026-06",
      "n": 11
    },
    {
      "week": "2026-11",
      "n": 8
    },
    {
      "week": "2026-14",
      "n": 12
    },
    {
      "week": "2026-15",
      "n": 4
    },
    {
      "week": "2026-17",
      "n": 4
    },
    {
      "week": "2026-18",
      "n": 16
    },
    {
      "week": "2026-20",
      "n": 6
    },
    {
      "week": "2026-22",
      "n": 9
    },
    {
      "week": "2026-23",
      "n": 10
    },
    {
      "week": "2026-24",
      "n": 6
    },
    {
      "week": "2026-25",
      "n": 21
    },
    {
      "week": "2026-26",
      "n": 17
    },
    {
      "week": "2026-27",
      "n": 5
    },
    {
      "week": "2026-28",
      "n": 20
    },
    {
      "week": "2026-31",
      "n": 2
    },
    {
      "week": "2026-36",
      "n": 1
    },
    {
      "week": "2026-40",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.49.31",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.48.1",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "infrastructure",
    "bioconductor-package",
    "core-services"
  ],
  "_stars": 10,
  "_contributors": [
    {
      "user": "link-ny",
      "count": 426,
      "uuid": 4392950
    },
    {
      "user": "dtenenba",
      "count": 183,
      "uuid": 2286826
    },
    {
      "user": "lshep",
      "count": 129,
      "uuid": 18724380
    },
    {
      "user": "mtmorgan",
      "count": 22,
      "uuid": 118552
    },
    {
      "user": "nturaga",
      "count": 16,
      "uuid": 2746443
    },
    {
      "user": "jwokaty",
      "count": 16,
      "uuid": 1744257
    },
    {
      "user": "federicomarini",
      "count": 11,
      "uuid": 7447478
    },
    {
      "user": "grimbough",
      "count": 11,
      "uuid": 971237
    },
    {
      "user": "dvantwisk",
      "count": 8,
      "uuid": 10927671
    },
    {
      "user": "lcolladotor",
      "count": 6,
      "uuid": 2288213
    },
    {
      "user": "zeehio",
      "count": 3,
      "uuid": 75441
    },
    {
      "user": "pkrog",
      "count": 3,
      "uuid": 15377906
    },
    {
      "user": "llrs",
      "count": 3,
      "uuid": 6818218
    },
    {
      "user": "jeroen",
      "count": 3,
      "uuid": 216319
    },
    {
      "user": "c-mertes",
      "count": 2,
      "uuid": 22544249
    },
    {
      "user": "freekmanders",
      "count": 2,
      "uuid": 37289973
    },
    {
      "user": "hpages",
      "count": 2,
      "uuid": 8810451
    },
    {
      "user": "vobencha",
      "count": 2,
      "uuid": 2466173
    },
    {
      "user": "bisaloo",
      "count": 1,
      "uuid": 10783929
    },
    {
      "user": "jimhester",
      "count": 1,
      "uuid": 205275
    },
    {
      "user": "shians",
      "count": 1,
      "uuid": 6036662
    }
  ],
  "_userbio": {
    "uuid": 4392950,
    "type": "user",
    "name": "Marcel Ramos Pérez",
    "followers": 124,
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \r\nR :package: dev "
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BiocCheck"
  },
  "_devurl": "https://github.com/bioconductor/bioccheck",
  "_searchresults": 121,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/BiocCheck.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/bioconductor/bioccheck",
  "_realowner": "bioc",
  "_cranurl": true,
  "_exports": [
    ".BiocCheck",
    ".BiocPackage",
    "BiocCheck",
    "BiocCheckGitClone"
  ],
  "_help": [
    {
      "page": "BiocCheck",
      "title": "Check a package's adherence with the Bioconductor Package Guidelines",
      "topics": [
        "BiocCheck"
      ]
    },
    {
      "page": "BiocCheck-class",
      "title": "An internal class for composing BiocCheck reports",
      "topics": [
        "BiocCheck-class"
      ]
    },
    {
      "page": "BiocCheckGitClone",
      "title": "Checks specific to a Git clone of a package repository",
      "topics": [
        "BiocCheckGitClone"
      ]
    }
  ],
  "_readme": "https://github.com/Bioconductor/BiocCheck/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocManager",
    "biocViews",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "cachem",
    "callr",
    "cli",
    "codetools",
    "commonmark",
    "cpp11",
    "curl",
    "DBI",
    "dbplyr",
    "dplyr",
    "evaluate",
    "fastmap",
    "filelock",
    "generics",
    "glue",
    "graph",
    "highr",
    "httr",
    "httr2",
    "jsonlite",
    "knitr",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "otel",
    "pillar",
    "pkgconfig",
    "processx",
    "ps",
    "purrr",
    "R6",
    "RBGL",
    "RCurl",
    "rlang",
    "RSQLite",
    "RUnit",
    "rvest",
    "selectr",
    "stringdist",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "xfun",
    "XML",
    "xml2",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "BiocCheck.Rmd",
      "filename": "BiocCheck.html",
      "title": "BiocCheck: Ensuring Bioconductor package guidelines",
      "engine": "knitr::rmarkdown",
      "headings": [
        "BiocCheck Summary",
        "Using BiocCheck",
        "When should BiocCheck be run",
        "Installing BiocCheck",
        "Interpreting BiocCheck output",
        "Installation",
        "Deprecated Package Checks",
        "Remotes Usage Check",
        "LazyData Usage Check",
        "Version Checks",
        "Package and File Size Check",
        "biocViews Checks",
        "Build System Compatibility Checks",
        "DESCRIPTION checks",
        "NAMESPACE checks",
        ".Rbuildignore checks",
        "BiocCheck output folder check",
        "Check for inst/doc folder",
        "Vignette Checks",
        "Checking Install or Update Package Calls in R code",
        "Coding Practices Checks",
        "Function length checking",
        "man page checking",
        "NEWS checks",
        "Unit Test Checks",
        "Formatting checks",
        "Duplication checks",
        "bioc-devel Subscription Check",
        "Support Site Registration Check",
        "BiocCheckGitClone",
        "Using BiocCheckGitClone",
        "Interpreting BiocCheckGitClone output",
        "Bad File Check",
        "DESCRIPTION checks",
        "CITATION checks",
        "Expanding BiocCheck",
        "SessionInfo"
      ],
      "created": "2014-01-21 21:57:08",
      "modified": "2026-07-08 21:39:24",
      "commits": 128
    }
  ],
  "_score": 9.65681663804417,
  "_indexed": false,
  "_nocasepkg": "bioccheck",
  "_universes": [
    "link-ny"
  ],
  "_indexurl": "https://bioc.r-universe.dev/BiocCheck",
  "_previous": "1.49.31",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.49.32",
      "date": "2026-09-30T20:01:19.000Z",
      "distro": "resolute",
      "commit": "28c6e9438e005dd6af104f1e89703ac5f3e2ef0f",
      "fileid": "https://r2.ropensci.org/90f19c2d63b3402915584e2b6255f2cfa2fa16e0d29098181ad7eeb2b6ed79bb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/36768818081"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.49.32",
      "date": "2026-09-30T20:01:19.000Z",
      "distro": "resolute",
      "commit": "28c6e9438e005dd6af104f1e89703ac5f3e2ef0f",
      "fileid": "https://r2.ropensci.org/278e94cb2ede26a75886c08c30d029b19b4f56db1dfee322b76c3f694db4af78",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/36768818081"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.49.32",
      "date": "2026-09-30T20:14:39.000Z",
      "commit": "28c6e9438e005dd6af104f1e89703ac5f3e2ef0f",
      "fileid": "https://r2.ropensci.org/9e3ff5d54b8edf8c7665151246fe8f4f68bc51c01cb542c2a4ea17717b5c7678",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/36768818081"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.49.32",
      "date": "2026-09-30T20:10:38.000Z",
      "commit": "28c6e9438e005dd6af104f1e89703ac5f3e2ef0f",
      "fileid": "https://r2.ropensci.org/2cee1ad78e82c267f8964f458b3ae0024fecad33d402840fd250acfb88a8fd0a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/36768818081"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.49.32",
      "date": "2026-09-30T20:01:15.000Z",
      "commit": "28c6e9438e005dd6af104f1e89703ac5f3e2ef0f",
      "fileid": "https://r2.ropensci.org/3fc9bded283b8af152f89d74c1708b62d7b844d7076da2f4d76e21b3e5e6d44a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/36768818081"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.49.32",
      "date": "2026-09-30T19:59:58.000Z",
      "commit": "28c6e9438e005dd6af104f1e89703ac5f3e2ef0f",
      "fileid": "https://r2.ropensci.org/e40c20ecd7b309b5c4ff07e94e22528be44f927ceb244fa26bc67807f93c6771",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/36768818081"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.49.32",
      "date": "2026-09-30T19:59:45.000Z",
      "commit": "28c6e9438e005dd6af104f1e89703ac5f3e2ef0f",
      "fileid": "https://r2.ropensci.org/b80fd545d97d1164bad8496378a957c9a7466d5c5a7c472d6e8d35126c105dfe",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/36768818081"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.49.32",
      "date": "2026-09-30T20:00:03.000Z",
      "commit": "28c6e9438e005dd6af104f1e89703ac5f3e2ef0f",
      "fileid": "https://r2.ropensci.org/2098a20362b1ae3107e95b230112c1e0493c0e9c3d3f5b80d48ed0ee4da06c9d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/36768818081"
    }
  ]
}