{
  "_id": "6a1ada621d7bb097a09e8066",
  "Package": "ReleaseLaunch",
  "Title": "R utilities related to Bioconductor release tasks",
  "Version": "0.99.30",
  "Encoding": "UTF-8",
  "Authors@R": "c(\nperson(\"Marcel\", \"Ramos\", role = c(\"aut\", \"cre\"),\nemail = \"marcel.ramos@sph.cuny.edu\",\ncomment = c(ORCID=\"0000-0002-3242-0582\")),\nperson(\"Lori\", \"Shepherd\", role = \"aut\"),\nperson(\"Hervé\", \"Pagès\", role = \"aut\"),\nperson(\"Nitesh\", \"Turaga\", role = \"ctb\")\n)",
  "Description": "The package faciliates a Bioconductor release. It\ncurrently updates existing Bioconductor repositories on GitHub\nafter a release. The script creates the RELEASE_XX_YY branch\nand pushes it to the Bioconductor organization.",
  "License": "Artistic-2.0",
  "VignetteBuilder": "knitr",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Date": "2026-04-29",
  "Config/pak/sysreqs": "git libgit2-dev libssl-dev",
  "Repository": "https://link-ny.r-universe.dev",
  "Date/Publication": "2026-04-29 21:43:08 UTC",
  "RemoteUrl": "https://github.com/Bioconductor/ReleaseLaunch",
  "RemoteRef": "HEAD",
  "RemoteSha": "d1e3957e08b6a8fd9a25bea6844f75a00a8a2cad",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 09:12:13 UTC",
    "User": "root"
  },
  "Author": "Marcel Ramos [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3242-0582>),\nLori Shepherd [aut],\nHervé Pagès [aut],\nNitesh Turaga [ctb]",
  "Maintainer": "Marcel Ramos <marcel.ramos@sph.cuny.edu>",
  "MD5sum": "34177bdc9957984d4061233fff6760d8",
  "_user": "link-ny",
  "_type": "src",
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  "_created": "2026-05-30T09:12:13.000Z",
  "_published": "2026-05-30T12:38:58.656Z",
  "_distro": "noble",
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    "author": "LiNk-NY <marcel.ramos@sph.cuny.edu>",
    "committer": "LiNk-NY <marcel.ramos@sph.cuny.edu>",
    "message": "version bump 0.99.30\n",
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    "email": "marcel.ramos@sph.cuny.edu",
    "login": "link-ny",
    "bluesky": "@mramos148.bsky.social",
    "linkedin": "in/mramos148",
    "orcid": "0000-0002-3242-0582",
    "twitter": "@M2RuseR",
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \nR 📦 dev ",
    "uuid": 4392950
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      "role": "Imports"
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      "role": "Imports"
    },
    {
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      "role": "Imports"
    },
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      "role": "Imports"
    },
    {
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      "role": "Imports"
    },
    {
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      "role": "Imports"
    },
    {
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      "role": "Imports"
    },
    {
      "package": "BiocParallel",
      "role": "Suggests"
    },
    {
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      "role": "Suggests"
    },
    {
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      "role": "Suggests"
    },
    {
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      "role": "Suggests"
    }
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      "count": 34,
      "uuid": 18724380
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    "uuid": 4392950,
    "type": "user",
    "name": "Marcel Ramos Pérez",
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \r\nR :package: dev "
  },
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ReleaseLaunch"
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  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ReleaseLaunch.html",
    "manual.pdf"
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    "add_gh_release_branch",
    "add_gh_release_branches",
    "bioc_release_yaml",
    "bioc_version_yaml",
    "clone_repo",
    "clone_repos",
    "extractNEWS",
    "get_bioc_software_manifest",
    "get_org_github_repos",
    "get_org_packages",
    "get_user_github_repos",
    "getPackagesNEWS",
    "packages_with_release_branch",
    "packages_without_release_branch",
    "printNEWS",
    "set_bioc_remotes",
    "update_local_repo",
    "update_local_repos"
  ],
  "_help": [
    {
      "page": "bioc_remotes",
      "title": "Convenience functions to set, rename, or validate a repo's remotes",
      "topics": [
        "add_bioc_remote",
        "bioc_remotes",
        "set_bioc_remotes"
      ]
    },
    {
      "page": "branch-release-gh",
      "title": "Add the release branch to GitHub package repositories",
      "topics": [
        "add_gh_release_branch",
        "add_gh_release_branches",
        "bioc_release_yaml",
        "bioc_version_yaml",
        "branch-release-gh"
      ]
    },
    {
      "page": "extractNEWS",
      "title": "Extract NEWS files from source package tarballs",
      "topics": [
        "extractNEWS"
      ]
    },
    {
      "page": "get-bioc-packages",
      "title": "Get the Bioconductor packages in the software manifest",
      "topics": [
        "get-bioc-packages",
        "get_bioc_software_manifest",
        "get_org_packages"
      ]
    },
    {
      "page": "get-github-repos",
      "title": "Get all repositories for a given GitHub organization or username",
      "topics": [
        "get-github-repos",
        "get_org_github_repos",
        "get_user_github_repos"
      ]
    },
    {
      "page": "getPackagesNEWS",
      "title": "Compare the old and current releases to generate the release announcements NEWS compilation",
      "topics": [
        "getPackagesNEWS",
        "printNEWS"
      ]
    },
    {
      "page": "packages_without_release_branch",
      "title": "Generate the list of packages to be updated",
      "topics": [
        "packages_without_release_branch",
        "packages_with_release_branch"
      ]
    },
    {
      "page": "update_local_repos",
      "title": "Update local repositories after Bioconductor Release",
      "topics": [
        "update_local_repo",
        "update_local_repos"
      ]
    }
  ],
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    "BiocBaseUtils",
    "BiocManager",
    "cli",
    "credentials",
    "curl",
    "gert",
    "gitcreds",
    "glue",
    "httr2",
    "ini",
    "jsonlite",
    "lifecycle",
    "magrittr",
    "openssl",
    "R6",
    "rappdirs",
    "rlang",
    "rstudioapi",
    "sys",
    "vctrs",
    "withr",
    "yaml",
    "zip"
  ],
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      "filename": "Branch-annotation-repo-HOWTO.html",
      "title": "How to branch the Annotation package repository",
      "author": "Bioconductor Maintainer",
      "engine": "knitr::rmarkdown",
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        "rsync annotations from current release",
        "Remove symlinks for old R versions for windows and mac on new devel",
        "Set up <master.bioconductor.org>",
        "Log on master as webadmin",
        "Remove symlink and create empty annotation folder",
        "Create a new annotation folder",
        "Back to nebbiolo1 to run the propagation scripts",
        "Update bioconductor.org/config.yaml to build landing pages for 3.23"
      ],
      "created": "2022-11-29 20:16:38",
      "modified": "2025-11-10 14:04:06",
      "commits": 6
    },
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      "filename": "Flush-Packages-HOWTO.html",
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      "author": "Bioconductor Maintainer",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Flushing the Software Repository",
        "Check the Day's Report",
        "Comment Out Software Propagation in the Crontab",
        "Make a Backup",
        "Remove All Packages",
        "Rerun the postrun.sh",
        "Manually Run updateReposPkgs-bioc.sh",
        "Uncomment Software Propagation in the Crontab"
      ],
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      "filename": "ReleaseChecklist.html",
      "title": "The Release Checklist",
      "author": "Bioconductor Maintainer",
      "engine": "knitr::rmarkdown",
      "headings": [
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        "R versions",
        "Six weeks before",
        "Four weeks before",
        "Three weeks before",
        "Two weeks before",
        "One week before",
        "Day before we branch (D-2):",
        "Day we branch (D-1):",
        "Release day",
        "Post-release",
        "Week after the Release (D+):"
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      "modified": "2026-03-18 17:09:07",
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      "engine": "knitr::rmarkdown",
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        "A. Introduction",
        "B. Preliminary steps",
        "C. Version bumps and branch creation for software packages",
        "C1. Comment out all builds in crontab on central BioC 3.23 builder",
        "C2. Ask people to stop committing/pushing changes to the BioC git server",
        "C3. Modify packages.conf to block all commits",
        "C4. Disable hooks",
        "C5. Log on the machine where you've performed the preliminary steps",
        "C6. Checkout/update the RELEASE_3_23 branch of the manifest repo",
        "C7. Set the BBS_HOME, WORKING_DIR and MANIFEST_FILE environment variables",
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        "D1. Data-experiment packages",
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        "F4. Sync all core Bioconductor packages hosted on GitHub"
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