{
  "_id": "6ac8c956de46216d5edd7347",
  "Package": "oncoKBData",
  "Title": "A package to access the oncoKB web API",
  "Version": "0.99.7",
  "Authors@R": "person(\"Marcel\", \"Ramos\", \"\", \"marcel.ramos@sph.cuny.edu\",\nc(\"aut\", \"cre\"), c(ORCID = \"0000-0002-3242-0582\"))",
  "Description": "It provides access to the oncoKB API using the rapiclient\nand AnVIL R / Bioconductor packages. It allows access to both\npublic and private APIs. Private API access requires a token\nobtained from https://www.oncokb.org.",
  "biocViews": "Infrastructure, ThirdPartyClient",
  "URL": "https://github.com/waldronlab/oncoKBData",
  "BugReports": "https://github.com/waldronlab/oncoKBData/issues",
  "VignetteBuilder": "knitr",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Date": "2025-05-09",
  "Config/pak/sysreqs": "cmake make libicu-dev libsecret-1-dev libuv1-dev\nlibssl-dev zlib1g-dev",
  "Repository": "https://link-ny.r-universe.dev",
  "Date/Publication": "2026-03-26 18:13:18 UTC",
  "RemoteUrl": "https://github.com/waldronlab/oncoKBData",
  "RemoteRef": "HEAD",
  "RemoteSha": "f6720bd2091f94099f6e8333eb2a304a0b4b5d9c",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-09 10:22:04 UTC",
    "User": "root"
  },
  "Author": "Marcel Ramos [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3242-0582>)",
  "Maintainer": "Marcel Ramos <marcel.ramos@sph.cuny.edu>",
  "_user": "link-ny",
  "_type": "src",
  "_file": "oncoKBData_0.99.7.tar.gz",
  "_fileid": "https://r2.ropensci.org/6dc49f32068f005df2161892e0db7a3a3bd6f7e07b72d53dd48f88b6d4e562ba",
  "_filesize": 113300,
  "_sha256": "6dc49f32068f005df2161892e0db7a3a3bd6f7e07b72d53dd48f88b6d4e562ba",
  "_expires": "2027-01-17T11:00:36.000Z",
  "_created": "2026-10-09T10:22:04.000Z",
  "_published": "2026-10-09T11:00:38.057Z",
  "_buildurl": "https://github.com/r-universe/link-ny/actions/runs/37916803744",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 113776181863,
      "time": 153,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11610155963"
    },
    {
      "job": 113776181927,
      "time": 148,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11610066071"
    },
    {
      "job": 113776181843,
      "time": 111,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11612081845"
    },
    {
      "job": 113776181919,
      "time": 126,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11610579959"
    },
    {
      "job": 113775020751,
      "time": 197,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11610311177"
    },
    {
      "job": 113776181847,
      "time": 125,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11610615736"
    },
    {
      "job": 113776181909,
      "time": 92,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11610381451"
    },
    {
      "job": 113776182018,
      "time": 114,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11610431466"
    },
    {
      "job": 113776181890,
      "time": 93,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11610810656"
    }
  ],
  "_upstream": "https://github.com/waldronlab/oncoKBData",
  "_commit": {
    "id": "f6720bd2091f94099f6e8333eb2a304a0b4b5d9c",
    "author": "Marcel Ramos Pérez <LiNk-NY@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Migrate pr_check.yml to ci.yml (#1)\n\n* Add ci.yml reusable-workflow wrapper\n\n* Remove pr_check.yml (replaced by ci.yml)",
    "time": 1774548798
  },
  "_maintainer": {
    "name": "Marcel Ramos",
    "email": "marcel.ramos@sph.cuny.edu",
    "login": "link-ny",
    "bluesky": "@mramos148.bsky.social",
    "linkedin": "in/mramos148",
    "orcid": "0000-0002-3242-0582",
    "twitter": "@M2RuseR",
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \nR 📦 dev ",
    "uuid": 4392950
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.3.0",
      "role": "Depends"
    },
    {
      "package": "AnVIL",
      "version": ">= 1.21.3",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "waldronlab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-13",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "infrastructure",
    "thirdpartyclient",
    "u24ca289073"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "link-ny",
      "count": 22,
      "uuid": 4392950
    }
  ],
  "_userbio": {
    "uuid": 4392950,
    "type": "user",
    "name": "Marcel Ramos Pérez",
    "followers": 123,
    "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member /  \r\nR :package: dev "
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/oncoKBData"
  },
  "_devurl": "https://github.com/waldronlab/oncokbdata",
  "_searchresults": 2,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/oncoKBData.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_cranurl": false,
  "_exports": [
    "cancerGeneList",
    "curatedGenes",
    "levelsOfEvidence",
    "oncoKB",
    "operations"
  ],
  "_help": [
    {
      "page": "cancerGeneList",
      "title": "Obtain the OncoKB cancer gene list",
      "topics": [
        "cancerGeneList"
      ]
    },
    {
      "page": "curatedGenes",
      "title": "Get a table of curated oncogenes",
      "topics": [
        "curatedGenes"
      ]
    },
    {
      "page": "levelsOfEvidence",
      "title": "Get the Levels of Evidence Tables from OncoKB",
      "topics": [
        "levelsOfEvidence"
      ]
    },
    {
      "page": "oncoKB",
      "title": "The R interface to the oncoKB API Data Service",
      "topics": [
        "oncoKB"
      ]
    },
    {
      "page": "oncoKB-class",
      "title": "A class for representing the oncoKB API protocol",
      "topics": [
        ".oncoKB",
        "oncoKB-class",
        "operations,oncoKB-method"
      ]
    }
  ],
  "_readme": "https://github.com/waldronlab/oncoKBData/raw/HEAD/README.md",
  "_rundeps": [
    "AnVIL",
    "AnVILBase",
    "askpass",
    "base64enc",
    "BiocBaseUtils",
    "BiocGenerics",
    "bslib",
    "cachem",
    "cli",
    "commonmark",
    "cpp11",
    "crosstalk",
    "curl",
    "digest",
    "dplyr",
    "DT",
    "evaluate",
    "fastmap",
    "filelock",
    "fontawesome",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "GCPtools",
    "generics",
    "glue",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "httr2",
    "jquerylib",
    "jsonlite",
    "keyring",
    "knitr",
    "lambda.r",
    "later",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "miniUI",
    "openssl",
    "otel",
    "pillar",
    "pkgconfig",
    "promises",
    "purrr",
    "R6",
    "rapiclient",
    "rappdirs",
    "Rcpp",
    "rlang",
    "rmarkdown",
    "S4Vectors",
    "sass",
    "shiny",
    "sourcetools",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "utf8",
    "vctrs",
    "withr",
    "xfun",
    "xtable",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "oncoKBData.Rmd",
      "filename": "oncoKBData.html",
      "title": "Accessing the OncoKB API with oncoKBData",
      "author": "Marcel Ramos Perez",
      "engine": "knitr::rmarkdown",
      "headings": [
        "oncoKBData",
        "Installation",
        "Package Load",
        "Introduction",
        "API representation",
        "Operations",
        "Levels of Evidence",
        "Gene tables",
        "Session Information"
      ],
      "created": "2023-03-01 22:27:37",
      "modified": "2025-05-07 21:44:14",
      "commits": 7
    }
  ],
  "_score": 2.6989700043360187,
  "_indexed": false,
  "_nocasepkg": "oncokbdata",
  "_universes": [
    "link-ny"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.99.7",
      "date": "2026-10-09T10:24:23.000Z",
      "distro": "resolute",
      "commit": "f6720bd2091f94099f6e8333eb2a304a0b4b5d9c",
      "fileid": "https://r2.ropensci.org/8d4a2ebe10e3545c75da747461920d4377994a90577fb8efd6a26249b95a66b5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/37916803744"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.99.7",
      "date": "2026-10-09T10:24:17.000Z",
      "distro": "resolute",
      "commit": "f6720bd2091f94099f6e8333eb2a304a0b4b5d9c",
      "fileid": "https://r2.ropensci.org/8d295a107a067fb7893a73e69d9ae7ecc8f38c469a81957c97a73f6df4de143e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/37916803744"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.99.7",
      "date": "2026-10-09T10:59:43.000Z",
      "commit": "f6720bd2091f94099f6e8333eb2a304a0b4b5d9c",
      "fileid": "https://r2.ropensci.org/793047552c82725c39283c39bfd20e400567fa7de984302df76d6b164414e429",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/37916803744"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.99.7",
      "date": "2026-10-09T10:53:39.000Z",
      "commit": "f6720bd2091f94099f6e8333eb2a304a0b4b5d9c",
      "fileid": "https://r2.ropensci.org/53fb29cc033a8da45a651bf38d22678151cc94c7eb845d2cdc0be62fa3a1f74b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/37916803744"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.99.7",
      "date": "2026-10-09T10:24:31.000Z",
      "commit": "f6720bd2091f94099f6e8333eb2a304a0b4b5d9c",
      "fileid": "https://r2.ropensci.org/e500838598d1d1f1c59550e760dcc9348c89b7818e0b268a193ec94e0e9e3bea",
      "status": "success",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/37916803744"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.99.7",
      "date": "2026-10-09T10:23:15.000Z",
      "commit": "f6720bd2091f94099f6e8333eb2a304a0b4b5d9c",
      "fileid": "https://r2.ropensci.org/4184fa577383ca1315e4403884aedf908b6698fbc81c00ee708ab505741b6cc0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/37916803744"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.99.7",
      "date": "2026-10-09T10:23:19.000Z",
      "commit": "f6720bd2091f94099f6e8333eb2a304a0b4b5d9c",
      "fileid": "https://r2.ropensci.org/e58c067c4bc0a1d4b5a543d53cf1f9b00cda28a1fd3d51939efc333afe7129df",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/37916803744"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.99.7",
      "date": "2026-10-09T10:23:16.000Z",
      "commit": "f6720bd2091f94099f6e8333eb2a304a0b4b5d9c",
      "fileid": "https://r2.ropensci.org/40aa60d421fc280b205ea3b7a96861f7d9cabad4b6a83adc5a8d5d7aaa778848",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/link-ny/actions/runs/37916803744"
    }
  ]
}