Package: cBioPortalData
Title: Exposes and Makes Available Data from the cBioPortal Web
        Resources
Version: 2.25.1
Authors@R: c(
    person("Levi", "Waldron", , "lwaldron.research@gmail.com", role = "aut"),
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-3242-0582")),
    person("Karim", "Mezhoud", , "kmezhoud@gmail.com", role = "ctb"),
    person("NCI", role = "fnd",
           comment = c(GrantNo. = "U24CA289073"))
  )
Description: The cBioPortalData R package accesses study datasets from
        the cBio Cancer Genomics Portal. It accesses the data either
        from the pre-packaged zip / tar files or from the API interface
        that was recently implemented by the cBioPortal Data Team. The
        package can provide data in either tabular format or with
        MultiAssayExperiment object that uses familiar Bioconductor
        data representations.
Depends: R (>= 4.5.0), AnVIL (>= 1.19.5), MultiAssayExperiment
Imports: BiocBaseUtils, BiocFileCache (>= 1.5.3), digest, dplyr,
        Seqinfo, GenomicRanges, httr, IRanges, methods, readr,
        RaggedExperiment, RTCGAToolbox (>= 2.19.7), S4Vectors,
        SummarizedExperiment, stats, tibble, tidyr, TCGAutils (>=
        1.9.4), utils
Suggests: BiocStyle, jsonlite, knitr, survival, survminer, rmarkdown,
        testthat
Date: 2026-02-23
License: AGPL-3
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/waldronlab/cBioPortalData
BugReports: https://github.com/waldronlab/cBioPortalData/issues
biocViews: Software, Infrastructure, ThirdPartyClient
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Collate: 'utils.R' 'cBioDataPack.R' 'cBioPortal-class.R' 'cBioPortal.R'
        'cBioPortalData-pkg.R' 'cBioPortalData.R' 'cache.R'
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libsecret-1-dev libuv1-dev libxml2-dev libssl-dev
        libx11-dev xz-utils zlib1g-dev
Repository: https://link-ny.r-universe.dev
Date/Publication: 2026-05-14 21:08:32 UTC
RemoteUrl: https://github.com/waldronlab/cBioPortalData
RemoteRef: HEAD
RemoteSha: a9714e8ab9fde119c1516b0915bc15d2a26d989c
NeedsCompilation: no
Packaged: 2026-07-02 21:45:20 UTC; root
Author: Levi Waldron [aut],
  Marcel Ramos [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3242-0582>),
  Karim Mezhoud [ctb],
  NCI [fnd] (GrantNo.: U24CA289073)
Maintainer: Marcel Ramos <marcel.ramos@sph.cuny.edu>