Type: Package
Package: curatedTCGAData
Title: Curated Data from The Cancer Genome Atlas (TCGA) as
        MultiAssayExperiment Objects
Version: 1.35.0
Authors@R: c(
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-3242-0582")),
    person("Levi", "Waldron", , "lwaldron.research@gmail.com", role = "ctb"),
    person("Lucas", "Schiffer", , "schiffer.lucas@gmail.com", role = "ctb"),
    person("Ludwig", "Geistlinger", , "ludwig.geistlinger@sph.cuny.edu", role = "ctb"),
    person("Valerie", "Obenchain", , "valerie.obenchain@roswellpark.org", role = "ctb"),
    person("Martin", "Morgan", , "martin.morgan@roswellpark.org", role = "ctb"),
    person("NCI", role = "fnd",
           comment = c(GrantNo. = "U24CA289073"))
  )
Description: This package provides publicly available data from The
        Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects.
        MultiAssayExperiment integrates multiple assays (e.g., RNA-seq,
        copy number, mutation, microRNA, protein, and others) with
        clinical / pathological data.  It also links assay barcodes
        with patient identifiers, enabling harmonized subsetting of
        rows (features) and columns (patients / samples) across the
        entire multi-'omics experiment.
License: Artistic-2.0
BugReports: https://github.com/waldronlab/curatedTCGAData/issues
Depends: R (>= 4.5.0), MultiAssayExperiment
Imports: AnnotationHub, ExperimentHub, HDF5Array, methods, S4Vectors,
        stats, SummarizedExperiment, utils
Suggests: BiocStyle, knitr, RaggedExperiment, readr, rmarkdown,
        TCGAutils, testthat
VignetteBuilder: knitr
biocViews: Homo_sapiens_Data, ReproducibleResearch, CancerData,
        ExperimentHub
Encoding: UTF-8
RoxygenNote: 7.3.2
Date: 2024-11-13
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://link-ny.r-universe.dev
Date/Publication: 2026-06-25 18:40:06 UTC
RemoteUrl: https://github.com/waldronlab/curatedTCGAData
RemoteRef: HEAD
RemoteSha: 5c423dfe2210f65ca85ca78ef3fd0bf25e1e3621
NeedsCompilation: no
Packaged: 2026-06-25 19:57:44 UTC; root
Author: Marcel Ramos [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3242-0582>),
  Levi Waldron [ctb],
  Lucas Schiffer [ctb],
  Ludwig Geistlinger [ctb],
  Valerie Obenchain [ctb],
  Martin Morgan [ctb],
  NCI [fnd] (GrantNo.: U24CA289073)
Maintainer: Marcel Ramos <marcel.ramos@sph.cuny.edu>