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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "curatedTCGAData" in publications use:'
type: software
license: Artistic-2.0
title: 'curatedTCGAData: Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment
  Objects'
version: 1.27.0
doi: 10.1200/CCI.19.00119
identifiers:
- type: doi
  value: 10.32614/CRAN.package.curatedTCGAData
abstract: This package provides publicly available data from The Cancer Genome Atlas
  (TCGA) as MultiAssayExperiment objects. MultiAssayExperiment integrates multiple
  assays (e.g., RNA-seq, copy number, mutation, microRNA, protein, and others) with
  clinical / pathological data. It also links assay barcodes with patient identifiers,
  enabling harmonized subsetting of rows (features) and columns (patients / samples)
  across the entire multi-'omics experiment.
authors:
- family-names: Ramos
  given-names: Marcel
  email: marcel.ramos@roswellpark.org
  orcid: https://orcid.org/0000-0002-3242-0582
preferred-citation:
  type: article
  title: Multiomic Integration of Public Oncology Databases in Bioconductor
  authors:
  - family-names: Ramos
    given-names: Marcel
    email: marcel.ramos@roswellpark.org
    orcid: https://orcid.org/0000-0002-3242-0582
  - family-names: Geistlinger
    given-names: Ludwig
  - family-names: Oh
    given-names: Sehyun
  - family-names: Schiffer
    given-names: Lucas
  - family-names: Azhar
    given-names: Rimsha
  - family-names: Kodali
    given-names: Hanish
  - family-names: Bruijn
    given-names: Ino
    name-particle: de
  - family-names: Gao
    given-names: Jianjiong
  - family-names: Carey
    given-names: Vincent J.
  - family-names: Morgan
    given-names: Martin
  - family-names: Waldron
    given-names: Levi
  journal: JCO Clinical Cancer Informatics
  volume: '1'
  issue: '4'
  year: '2020'
  doi: 10.1200/CCI.19.00119
  notes: 'PMID: 33119407'
  url: https://ascopubs.org/doi/pdf/10.1200/CCI.19.00119
  start: 958-971
repository: https://link-ny.r-universe.dev
repository-code: https://github.com/waldronlab/curatedTCGAData
commit: 74c1385fa397dd672a9f724e6e627ee8ff1bbb2c
url: https://github.com/waldronlab/curatedTCGAData
date-released: '2024-02-06'
contact:
- family-names: Ramos
  given-names: Marcel
  email: marcel.ramos@roswellpark.org
  orcid: https://orcid.org/0000-0002-3242-0582