Introduction to the AnVIL packageUpdated 9 days ago

Nitesh Turaga, Vincent Carey, BJ Stubbs, Marcel Ramos, Martin Morgan

Rendered from Introduction.Rmd in AnVIL 1.19.3.
Introduction to the AnVIL packageUpdated 9 days ago

Nitesh Turaga, Vincent Carey, BJ Stubbs, Marcel Ramos, Martin Morgan

Rendered from Introduction.Rmd in AnVIL 1.19.3.
BiocCheck: Ensuring Bioconductor package guidelinesUpdated 20 days ago

Marcel Ramos

Rendered from BiocCheck.Rmd in BiocCheck 1.43.2.
BiocCheck: Ensuring Bioconductor package guidelinesUpdated 20 days ago

Marcel Ramos

Rendered from BiocCheck.Rmd in BiocCheck 1.43.2.
How to version bump and branchUpdated 22 days ago

Bioconductor Maintainer

Rendered from Version-bump-and-branch-creation-HOWTO.Rmd in ReleaseLaunch 0.99.28.
Running an AnVIL workflow within RUpdated 30 days ago

Kayla Interdonato, Yubo Cheng, Martin Morgan

Rendered from RunningWorkflow.Rmd in AnVIL 1.19.3.
Running an AnVIL workflow within RUpdated 30 days ago

Kayla Interdonato, Yubo Cheng, Martin Morgan

Rendered from RunningWorkflow.Rmd in AnVIL 1.19.3.
Introduction to the AnVILAz packageUpdated 30 days ago

Marcel Ramos, Martin Morgan

Rendered from IntroductionToAnVILAz.Rmd in AnVILAz 1.1.0.
Working with workspaces on AnVIL AzureUpdated 30 days ago

Marcel Ramos, Martin Morgan

Rendered from AnVILAzWorkspaces.Rmd in AnVILAz 1.1.0.
Introduction to the AnVILAz packageUpdated 30 days ago

Marcel Ramos, Martin Morgan

Rendered from IntroductionToAnVILAz.Rmd in AnVILAz 1.1.0.
Working with workspaces on AnVIL AzureUpdated 30 days ago

Marcel Ramos, Martin Morgan

Rendered from AnVILAzWorkspaces.Rmd in AnVILAz 1.1.0.
Working with AnVIL on GCPUpdated 30 days ago

Nitesh Turaga, Vincent Carey, BJ Stubbs, Marcel Ramos, Martin Morgan

Rendered from AnVILGCPIntroduction.Rmd in AnVILGCP 1.1.1.
Working with AnVIL on GCPUpdated 30 days ago

Nitesh Turaga, Vincent Carey, BJ Stubbs, Marcel Ramos, Martin Morgan

Rendered from AnVILGCPIntroduction.Rmd in AnVILGCP 1.1.1.
ASCAT to RaggedExperimentUpdated 1 months ago

Lydia King, Marcel Ramos

Rendered from ASCAT_to_RaggedExperiment.Rmd in RaggedExperiment 1.31.0.
ASCAT to RaggedExperimentUpdated 1 months ago

Lydia King, Marcel Ramos

Rendered from ASCAT_to_RaggedExperiment.Rmd in RaggedExperiment 1.31.0.
curatedTCGADataUpdated 1 months ago

Marcel Ramos

Rendered from curatedTCGAData.Rmd in curatedTCGAData 1.29.1.
curatedTCGADataUpdated 1 months ago

Marcel Ramos

Rendered from curatedTCGAData.Rmd in curatedTCGAData 1.29.1.
ECCITEseq Peripheral BloodUpdated 1 months ago

Dario Righelli

Rendered from ECCITEseq.Rmd in SingleCellMultiModal 1.19.1.
PBMCs profiled with the Chromium Single Cell Multiome ATAC + Gene Expression from 10xUpdated 1 months ago

Marcel Ramos

Rendered from scMultiome.Rmd in SingleCellMultiModal 1.19.1.
ECCITEseq Peripheral BloodUpdated 1 months ago

Dario Righelli

Rendered from ECCITEseq.Rmd in SingleCellMultiModal 1.19.1.
PBMCs profiled with the Chromium Single Cell Multiome ATAC + Gene Expression from 10xUpdated 1 months ago

Marcel Ramos

Rendered from scMultiome.Rmd in SingleCellMultiModal 1.19.1.
CITEseq Cord BloodUpdated 1 months ago

Dario Righelli

Rendered from CITEseq.Rmd in SingleCellMultiModal 1.19.1.
G&T-seq Mouse Embryo (8-cell stage)Updated 1 months ago

Marcel Ramos

Rendered from GTseq.Rmd in SingleCellMultiModal 1.19.1.
scNMT Mouse GastrulationUpdated 1 months ago

Marcel Ramos

Rendered from scNMT.Rmd in SingleCellMultiModal 1.19.1.
SCoPE2: macrophage vs monocytesUpdated 1 months ago

Marcel Ramos

Rendered from SCoPE2.Rmd in SingleCellMultiModal 1.19.1.
seqFISH Mouse Visual CortexUpdated 1 months ago

Dario Righelli

Rendered from seqFISH.Rmd in SingleCellMultiModal 1.19.1.
SingleCellMultiModal IntroductionUpdated 1 months ago

Marcel Ramos

Rendered from SingleCellMultiModal.Rmd in SingleCellMultiModal 1.19.1.
CITEseq Cord BloodUpdated 1 months ago

Dario Righelli

Rendered from CITEseq.Rmd in SingleCellMultiModal 1.19.1.
G&T-seq Mouse Embryo (8-cell stage)Updated 1 months ago

Marcel Ramos

Rendered from GTseq.Rmd in SingleCellMultiModal 1.19.1.
scNMT Mouse GastrulationUpdated 1 months ago

Marcel Ramos

Rendered from scNMT.Rmd in SingleCellMultiModal 1.19.1.
SCoPE2: macrophage vs monocytesUpdated 1 months ago

Marcel Ramos

Rendered from SCoPE2.Rmd in SingleCellMultiModal 1.19.1.
seqFISH Mouse Visual CortexUpdated 1 months ago

Dario Righelli

Rendered from seqFISH.Rmd in SingleCellMultiModal 1.19.1.
SingleCellMultiModal IntroductionUpdated 1 months ago

Marcel Ramos

Rendered from SingleCellMultiModal.Rmd in SingleCellMultiModal 1.19.1.
VisiumIO: Import 10X Genomics Visium Experiment DataUpdated 1 months ago

Marcel Ramos

Rendered from VisiumIO.Rmd in VisiumIO 1.3.1.
VisiumIO: Import 10X Genomics Visium Experiment DataUpdated 1 months ago

Marcel Ramos

Rendered from VisiumIO.Rmd in VisiumIO 1.3.1.
TENxIO: Import Single Cell Data FilesUpdated 1 months ago

Marcel Ramos

Rendered from TENxIO.Rmd in TENxIO 1.9.3.
TENxIO: Import Single Cell Data FilesUpdated 1 months ago

Marcel Ramos

Rendered from TENxIO.Rmd in TENxIO 1.9.2.
RaggedExperimentUpdated 1 months ago

Martin Morgan, Marcel Ramos

Rendered from RaggedExperiment.Rmd in RaggedExperiment 1.31.0.
RaggedExperimentUpdated 1 months ago

Martin Morgan, Marcel Ramos

Rendered from RaggedExperiment.Rmd in RaggedExperiment 1.31.0.
Dockstore and Bioconductor for AnVILUpdated 1 months ago

BJ Stubbs, S Gopaulakrishnan, Nitesh Truaga, Martin Morgan, Vincent Carey

Rendered from BiocDockstore.Rmd in AnVIL 1.19.3.
Dockstore and Bioconductor for AnVILUpdated 1 months ago

BJ Stubbs, S Gopaulakrishnan, Nitesh Truaga, Martin Morgan, Vincent Carey

Rendered from BiocDockstore.Rmd in AnVIL 1.19.3.
terraTCGAdata IntroductionUpdated 2 months ago

Marcel Ramos

Rendered from terraTCGAdata.Rmd in terraTCGAdata 1.11.0.
terraTCGAdata IntroductionUpdated 2 months ago

Marcel Ramos

Rendered from terraTCGAdata.Rmd in terraTCGAdata 1.11.0.
Publishing R / Bioconductor Packages To AnVIL WorkspacesUpdated 2 months ago

Martin Morgan

Rendered from AnVILPublishIntro.Rmd in AnVILPublish 1.17.0.
Publishing R / Bioconductor Packages To AnVIL WorkspacesUpdated 2 months ago

Martin Morgan

Rendered from AnVILPublishIntro.Rmd in AnVILPublish 1.17.0.
Installing and Managing Bioconductor PackagesUpdated 3 months ago

Marcel Ramos, Martin Morgan

Rendered from BiocManager.Rmd in BiocManager 1.30.25.
Installing and Managing Bioconductor PackagesUpdated 3 months ago

Marcel Ramos, Martin Morgan

Rendered from BiocManager.Rmd in BiocManager 1.30.25.
Introduction to AnVILBaseUpdated 5 months ago

Bioconductor AnVIL SIG

Rendered from AnVILBaseIntroduction.Rmd in AnVILBase 1.1.0.
Introduction to AnVILBaseUpdated 5 months ago

Bioconductor AnVIL SIG

Rendered from AnVILBaseIntroduction.Rmd in AnVILBase 1.1.0.
Transform and Validate JSON and NDJSONUpdated 5 months ago

Martin Morgan, Marcel Ramos

Rendered from a_rjsoncons.Rmd in rjsoncons 1.3.1.9100.
Install archived Bioconductor packages from previous releasesUpdated 6 months ago

Marcel Ramos

Rendered from BiocArchive.Rmd in BiocArchive 1.0.1.
Questions and answers from over the yearsUpdated 6 months ago

Sean Davis

Rendered from questions-and-answers.Rmd in GenomicDataCommons 1.31.0.
The Release ChecklistUpdated 7 months ago

Bioconductor Maintainer

Rendered from ReleaseChecklist.Rmd in ReleaseLaunch 0.99.28.
The GenomicDataCommons PackageUpdated 7 months ago

Sean Davis & Martin Morgan

Rendered from overview.Rmd in GenomicDataCommons 1.31.0.
Working with simple somatic mutationsUpdated 7 months ago

Sean Davis

Rendered from somatic_mutations.Rmd in GenomicDataCommons 1.31.0.
cBioPortalData: User GuideUpdated 10 months ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalData.Rmd in cBioPortalData 2.19.2.
cBioPortalData: User GuideUpdated 10 months ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalData.Rmd in cBioPortalData 2.19.1.
MultiAssayExperiment: The Integrative Bioconductor ContainerUpdated 10 months ago

MultiAssay Special Interest Group

Rendered from MultiAssayExperiment.Rmd in MultiAssayExperiment 1.33.1.
MultiAssayExperiment: The Integrative Bioconductor ContainerUpdated 10 months ago

MultiAssay Special Interest Group

Rendered from MultiAssayExperiment.Rmd in MultiAssayExperiment 1.33.1.
cgdsr to cBioPortalData: Migration TutorialUpdated 10 months ago

Karim Mezhoud & Marcel Ramos

Rendered from cgdsrMigration.Rmd in cBioPortalData 2.19.2.
cgdsr to cBioPortalData: Migration TutorialUpdated 10 months ago

Karim Mezhoud & Marcel Ramos

Rendered from cgdsrMigration.Rmd in cBioPortalData 2.19.1.
Overview of BiocPkgToolsUpdated 10 months ago

Shian Su, Vince Carey, Marcel Ramos, Lori Shepherd, Martin Morgan, Sean Davis

Rendered from BiocPkgTools.Rmd in BiocPkgTools 1.23.1.
TCGAutils: Helper functions for working with TCGA datasetsUpdated 1 years ago

Marcel Ramos & Levi Waldron

Rendered from TCGAutils.Rmd in TCGAutils 1.27.0.
TCGAutils: Helper functions for working with TCGA datasetsUpdated 1 years ago

Marcel Ramos & Levi Waldron

Rendered from TCGAutils.Rmd in TCGAutils 1.27.0.
cBioPortalData: API Reference Guide for DevsUpdated 1 years ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalRClient.Rmd in cBioPortalData 2.19.2.
cBioPortalData: API Reference Guide for DevsUpdated 1 years ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalRClient.Rmd in cBioPortalData 2.19.1.
UniProt.ws: A package for retrieving data from the UniProt web serviceUpdated 1 years ago

Marc Carlson

Rendered from UniProt.ws.Rmd in UniProt.ws 2.47.2.
UniProt.ws: A package for retrieving data from the UniProt web serviceUpdated 1 years ago

Marc Carlson

Rendered from UniProt.ws.Rmd in UniProt.ws 2.47.1.
How to branch the Annotation package repositoryUpdated 2 years ago

Bioconductor Maintainer

Rendered from Branch-annotation-repo-HOWTO.Rmd in ReleaseLaunch 0.99.28.
BiocHubsShiny: Interactive Display of Hub ResourcesUpdated 2 years ago

Marcel Ramos, Vincent J. Carey

Rendered from BiocHubsShiny.Rmd in BiocHubsShiny 1.7.1.
BiocHubsShiny: Interactive Display of Hub ResourcesUpdated 2 years ago

Marcel Ramos, Vincent J. Carey

Rendered from BiocHubsShiny.Rmd in BiocHubsShiny 1.7.1.
An Overview of the BiocIO packageUpdated 2 years ago

Daniel Van Twisk, Martin Morgan

Rendered from BiocIO.Rmd in BiocIO 1.17.1.
An Overview of the BiocIO packageUpdated 2 years ago

Daniel Van Twisk, Martin Morgan

Rendered from BiocIO.Rmd in BiocIO 1.17.0.
How to flush the Software repositoryUpdated 2 years ago

Bioconductor Maintainer

Rendered from Flush-Packages-HOWTO.Rmd in ReleaseLaunch 0.99.28.
BiocBaseUtils Quick StartUpdated 2 years ago

Bioconductor Core Team

Rendered from BiocBaseUtils.Rmd in BiocBaseUtils 1.9.0.
BiocBaseUtils Quick StartUpdated 2 years ago

Bioconductor Core Team

Rendered from BiocBaseUtils.Rmd in BiocBaseUtils 1.9.0.
MultiAssayExperiment: Quick Start GuideUpdated 3 years ago

Marcel Ramos & Levi Waldron

Rendered from QuickStartMultiAssay.Rmd in MultiAssayExperiment 1.33.1.
MultiAssayExperiment: Quick Start GuideUpdated 3 years ago

Marcel Ramos & Levi Waldron

Rendered from QuickStartMultiAssay.Rmd in MultiAssayExperiment 1.33.1.
Using DelayedMatrix with MultiAssayExperimentUpdated 3 years ago

MultiAssay Special Interest Group

Rendered from UsingHDF5Array.Rmd in MultiAssayExperiment 1.33.1.
Using DelayedMatrix with MultiAssayExperimentUpdated 3 years ago

MultiAssay Special Interest Group

Rendered from UsingHDF5Array.Rmd in MultiAssayExperiment 1.33.1.
cBioPortalData: Data Build ErrorsUpdated 3 years ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalDataErrors.Rmd in cBioPortalData 2.19.2.
cBioPortalData: Data Build ErrorsUpdated 3 years ago

Marcel Ramos & Levi Waldron

Rendered from cBioPortalDataErrors.Rmd in cBioPortalData 2.19.1.
RTCGAToolboxUpdated 4 years ago

Mehmet Kemal Samur

Rendered from RTCGAToolbox-vignette.Rmd in RTCGAToolbox 2.37.0.
RTCGAToolboxUpdated 4 years ago

Mehmet Kemal Samur

Rendered from RTCGAToolbox-vignette.Rmd in RTCGAToolbox 2.33.1.
Cheatsheet for MultiAssayExperimentUpdated 7 years ago

Marcel Ramos

Rendered from MultiAssayExperiment_cheatsheet.pdf.asis in MultiAssayExperiment 1.33.1.
Cheatsheet for MultiAssayExperimentUpdated 7 years ago

Marcel Ramos

Rendered from MultiAssayExperiment_cheatsheet.pdf.asis in MultiAssayExperiment 1.33.1.