This package is considered a duplicate. The official version of this package is found at:https://bioc.r-universe.dev/terraTCGAdata

Package: terraTCGAdata 1.17.1

terraTCGAdata: OpenAccess TCGA Data on Terra as MultiAssayExperiment

Leverage the existing open access TCGA data on Terra with well-established Bioconductor infrastructure. Make use of the Terra data model without learning its complexities. With a few functions, you can copy / download and generate a MultiAssayExperiment from the TCGA example workspaces provided by Terra.

Authors:Marcel Ramos [aut, cre], NHGRI [fnd]

terraTCGAdata_1.17.1.tar.gz
terraTCGAdata_1.17.1.zip(r-4.7)terraTCGAdata_1.17.1.zip(r-4.6)terraTCGAdata_1.17.1.zip(r-4.5)
terraTCGAdata_1.17.1.tgz(r-4.6-any)terraTCGAdata_1.17.1.tgz(r-4.5-any)
terraTCGAdata_1.17.1.tar.gz(r-4.7-any)terraTCGAdata_1.17.1.tar.gz(r-4.6-any)
terraTCGAdata_1.17.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
terraTCGAdata/json (API)

# Install 'terraTCGAdata' in R:

install.packages('terraTCGAdata', repos = c('https://link-ny.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/waldronlab/terratcgadata/issues

On BioConductor:terraTCGAdata-1.17.1(bioc 3.24)terraTCGAdata-1.16.0(bioc 3.23)

software infrastructure dataimport bioconductor-package u24hg010263

4.60 score 5 scripts 9 exports 133 dependencies

Last updated from:ffca88ef2d. Checks:9 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	OK	358
source / vignettes	OK	269
linux-release-x86_64	OK	319
macos-release-arm64	OK	194
macos-oldrel-arm64	OK	176
windows-devel	OK	229
windows-release	OK	238
windows-oldrel	OK	212
wasm-release	OK	202

Exports:getAssayData getAssayTable getClinical getClinicalTable getTCGAdatalist sampleTypesTable selectTCGAworkspace terraTCGAdata terraTCGAworkspace

Dependencies:abind AnnotationDbi AnVIL AnVILBase AnVILGCP askpass base64enc BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO BiocParallel Biostrings bit bit64 bitops blob bslib cachem cigarillo cli clipr codetools commonmark cpp11 crayon crosstalk curl DBI dbplyr DelayedArray digest dplyr DT evaluate fastmap filelock fontawesome formatR fs futile.logger futile.options GCPtools generics GenomeInfoDb GenomicAlignments GenomicDataCommons GenomicFeatures GenomicRanges glue highr hms htmltools htmlwidgets httpuv httr httr2 IRanges jquerylib jsonlite KEGGREST keyring knitr lambda.r later lattice lazyeval lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime miniUI MultiAssayExperiment openssl otel pillar pkgconfig png prettyunits progress promises purrr R6 RaggedExperiment rapiclient rappdirs Rcpp RCurl readr restfulr Rhtslib rjson rlang rmarkdown Rsamtools RSQLite rtracklayer rvest S4Arrays S4Vectors sass selectr Seqinfo shiny snow sourcetools SparseArray stringi stringr SummarizedExperiment sys TCGAutils tibble tidyr tidyselect tinytex tzdb UCSC.utils utf8 vctrs vroom withr xfun XML xml2 xtable XVector yaml

terraTCGAdata Introduction

Rendered fromterraTCGAdata.Rmdusingknitr::rmarkdown

Last update: 2025-11-17
Started: 2022-01-12

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Obtain assay datasets from Terra	getAssayData
Obtain a reference table for assay data in the Terra data model	getAssayTable
Obtain clinical data	getClinical
Obtain the reference table for clinical data	getClinicalTable
Import Terra TCGA data as a list	getTCGAdatalist
Get an overview of the samples available in the workspace	sampleTypesTable
Obtain a MultiAssayExperiment from the Terra workspace	terraTCGAdata
Obtain or set the Terra Workspace Project Dataset	selectTCGAworkspace terraTCGAworkspace