Package: AnVILGCP 0.99.33
AnVILGCP: The GCP R Client for the AnVIL
The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL platform. The package is designed to work with the AnVIL package. User-level interaction with this package should be minimal.
Authors:
AnVILGCP_0.99.33.tar.gz
AnVILGCP_0.99.33.zip(r-4.5)AnVILGCP_0.99.33.zip(r-4.4)AnVILGCP_0.99.33.zip(r-4.3)
AnVILGCP_0.99.33.tgz(r-4.4-any)AnVILGCP_0.99.33.tgz(r-4.3-any)
AnVILGCP_0.99.33.tar.gz(r-4.5-noble)AnVILGCP_0.99.33.tar.gz(r-4.4-noble)
AnVILGCP_0.99.33.tgz(r-4.4-emscripten)AnVILGCP_0.99.33.tgz(r-4.3-emscripten)
AnVILGCP.pdf |AnVILGCP.html✨
AnVILGCP/json (API)
NEWS
| # Install 'AnVILGCP' in R: |
| install.packages('AnVILGCP', repos = c('https://link-ny.r-universe.dev', 'https://cloud.r-project.org')) |
The latest version of this package failed to build. Look at thebuild logs for more information.
Bug tracker:https://github.com/bioconductor/anvilgcp/issues
On BioConductor:AnVILGCP-0.99.31(bioc 3.20)
Last updated 25 days agofrom:e6167b04aa. Checks:OK: 7. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 22 2024 |
| R-4.5-win | OK | Aug 22 2024 |
| R-4.5-linux | OK | Aug 22 2024 |
| R-4.4-win | OK | Aug 22 2024 |
| R-4.4-mac | OK | Aug 23 2024 |
| R-4.3-win | OK | Aug 23 2024 |
| R-4.3-mac | OK | Aug 23 2024 |
Exports:avbackupavcopyavdataavdata_importavdisksavfiles_backupavfiles_lsavfiles_restoreavfiles_rmavlistavnotebooksavnotebooks_delocalizeavnotebooks_localizeavremoveavrestoreavruntimeavruntimesavstorageavtableavtable_deleteavtable_delete_valuesavtable_importavtable_import_setavtable_import_statusavtable_pagedavtablesavworkflowavworkflow_configuration_getavworkflow_configuration_inputsavworkflow_configuration_outputsavworkflow_configuration_setavworkflow_configuration_templateavworkflow_configuration_updateavworkflow_filesavworkflow_infoavworkflow_jobsavworkflow_localizeavworkflow_nameavworkflow_namespaceavworkflow_runavworkflow_stopavworkflowsavworkspaceavworkspace_cloneavworkspace_nameavworkspace_namespaceavworkspacesdelocalizedrs_access_urldrs_cpdrs_hubdrs_statgcloud_access_tokengcloud_accountgcloud_cmdgcloud_existsgcloud_helpgcloud_projectgcloud_storagegcloud_storage_bucketsgcpgsutil_catgsutil_existsgsutil_helpgsutil_pipegsutil_requesterpaysgsutil_rsyncgsutil_statlocalize
Dependencies:AnVILAnVILBaseaskpassbase64encBiocBaseUtilsBiocManagerbslibcachemclicommonmarkcpp11crayoncrosstalkcurldigestdplyrDTevaluatefansifastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsgluehighrhtmltoolshtmlwidgetshttpuvhttrhttr2jquerylibjsonliteknitrlambda.rlaterlazyevallifecyclemagrittrmemoisemimeminiUIopensslpillarpkgconfigpromisespurrrR6rapiclientrappdirsRcpprlangrmarkdownsassshinysourcetoolsstringistringrsystibbletidyrtidyselecttinytexutf8vctrswithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Miscellaneous functions for interacting with AnVIL tables and files | av avdisks avfiles_backup avfiles_ls avfiles_restore avfiles_rm avruntime avruntimes avtable_import_status avtable_paged |
| Import data into the current workspace | avdata avdata_import |
| Notebook management | avnotebooks avnotebooks,gcp-method avnotebooks-methods avnotebooks_delocalize avnotebooks_delocalize,gcp-method avnotebooks_localize avnotebooks_localize,gcp-method |
| Methods that work with the primary datasets in the DATA tab | avtable avtable,gcp-method avtable-methods avtables avtables,gcp-method avtable_delete,gcp-method avtable_delete_values avtable_delete_values,gcp-method avtable_import avtable_import,gcp-method avtable_import_set avtable_import_set,gcp-method |
| Workflow configuration | avworkflow avworkflow_configurations avworkflow_configuration_get avworkflow_configuration_inputs avworkflow_configuration_outputs avworkflow_configuration_set avworkflow_configuration_template avworkflow_configuration_update avworkflow_name avworkflow_namespace print.avworkflow_configuration |
| AnVIL workflow methods | avworkflow-methods avworkflow_jobs,gcp-method |
| Workflow submissions and file outputs | avworkflows avworkflow_files avworkflow_info avworkflow_localize avworkflow_run avworkflow_stop |
| AnVIL Workspace GCP methods | avworkspace,gcp-method avworkspace-methods avworkspaces,gcp-method avworkspace_clone,gcp-method avworkspace_name,gcp-method avworkspace_namespace,gcp-method |
| DRS (Data Repository Service) URL management | drs drs_access_url drs_cp drs_hub drs_stat |
| gcloud command line utility interface | gcloud gcloud_account gcloud_cmd gcloud_exists gcloud_help gcloud_project gcloud_storage gcloud_storage_buckets |
| Obtain an access token for a service account | gcloud_access_token |
| GCP platform class | .gcp gcp gcp-class |
| Methods compatible with the GCP platform class | avbackup avbackup,gcp-method avcopy avcopy,gcp-method avlist avlist,gcp-method avremove avremove,gcp-method avrestore avrestore,gcp-method avstorage avstorage,gcp-method gcp-methods |
| gsutil command line utility interface | gsutil gsutil_cat gsutil_exists gsutil_help gsutil_pipe gsutil_requesterpays gsutil_rsync gsutil_stat |
| Copy packages, folders, or files to or from google buckets. | delocalize localize |
