Package: AnVILGCP 1.7.3

AnVILGCP: The GCP R Client for the AnVIL

The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL platform. The package is designed to use the API calls from the AnVIL package. It coordinates AnVIL workspace functionality with native GCP tools.

Authors:Marcel Ramos [aut, cre], Nitesh Turaga [aut], Martin Morgan [aut]

AnVILGCP_1.7.3.tar.gz
AnVILGCP_1.7.3.zip(r-4.7)AnVILGCP_1.7.3.zip(r-4.6)AnVILGCP_1.7.1.zip(r-4.5)
AnVILGCP_1.7.3.tgz(r-4.6-any)AnVILGCP_1.7.1.tgz(r-4.5-any)
AnVILGCP_1.7.3.tar.gz(r-4.7-any)AnVILGCP_1.7.3.tar.gz(r-4.6-any)
AnVILGCP_1.7.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
AnVILGCP/json (API)
NEWS

# Install 'AnVILGCP' in R:
install.packages('AnVILGCP', repos = c('https://link-ny.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/anvilgcp/issues

On BioConductor:AnVILGCP-1.7.3(bioc 3.24)AnVILGCP-1.6.0(bioc 3.23)

softwareinfrastructurethirdpartyclientdataimportu24hg010263

5.81 score 5 packages 39 scripts 60 exports 32 dependencies

Last updated from:d52ab2e170. Checks:7 OK, 2 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK145
source / vignettesOK233
linux-release-x86_64OK144
macos-release-arm64OK96
macos-oldrel-arm64FAIL68
windows-develOK97
windows-releaseOK100
windows-oldrelFAIL21
wasm-releaseOK117

Exports:avbackupavcopyavdataavdata_importavdisksavfiles_backupavfiles_lsavfiles_restoreavfiles_rmavlistavnotebooksavnotebooks_delocalizeavnotebooks_localizeavremoveavrestoreavruntimeavruntimesavstorageavtableavtable_deleteavtable_delete_valuesavtable_importavtable_import_setavtable_import_statusavtable_pagedavtablesavworkflowavworkflow_configuration_getavworkflow_configuration_inputsavworkflow_configuration_outputsavworkflow_configuration_setavworkflow_configuration_templateavworkflow_configuration_updateavworkflow_filesavworkflow_infoavworkflow_jobsavworkflow_localizeavworkflow_nameavworkflow_namespaceavworkflow_runavworkflow_stopavworkflowsavworkspaceavworkspace_cloneavworkspace_nameavworkspace_namespaceavworkspacesdelocalizedrs_hubdrs_nci_crdcgcpgsutil_catgsutil_existsgsutil_helpgsutil_pipegsutil_requesterpaysgsutil_rsyncgsutil_stathas_avworkspacelocalize

Dependencies:AnVILBaseaskpassBiocBaseUtilsclicpp11curldplyrGCPtoolsgenericsgluehttrhttr2jsonlitelifecyclemagrittrmimeopensslpillarpkgconfigpurrrR6rappdirsrlangstringistringrsystibbletidyrtidyselectutf8vctrswithr

Working with AnVIL on GCP

Nitesh Turaga, Vincent Carey, BJ Stubbs, Marcel Ramos, Martin Morgan

Rendered fromAnVILGCPIntroduction.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2026-05-22
Started: 2024-03-28

Readme and manuals

Help Manual

Help pageTopics
Miscellaneous functions for interacting with AnVIL tables and filesav avdisks avfiles_backup avfiles_ls avfiles_restore avfiles_rm avruntime avruntimes avtable_import_status avtable_paged
Import data into the current workspaceavdata avdata_import
Notebook managementavnotebooks avnotebooks,gcp-method avnotebooks-methods avnotebooks_delocalize avnotebooks_delocalize,gcp-method avnotebooks_localize avnotebooks_localize,gcp-method
Methods that work with the primary datasets in the DATA tabavtable avtable,gcp-method avtable-methods avtables avtables,gcp-method avtable_delete,gcp-method avtable_delete_values avtable_delete_values,gcp-method avtable_import avtable_import,gcp-method avtable_import_set avtable_import_set,gcp-method
Workflow configurationavworkflow avworkflow_configurations avworkflow_configuration_get avworkflow_configuration_inputs avworkflow_configuration_outputs avworkflow_configuration_set avworkflow_configuration_template avworkflow_configuration_update avworkflow_name avworkflow_namespace print.avworkflow_configuration
AnVIL workflow methodsavworkflow-methods avworkflow_jobs,gcp-method
Workflow submissions and file outputsavworkflows avworkflow_files avworkflow_info avworkflow_localize avworkflow_run avworkflow_stop
AnVIL Workspace GCP methodsavworkspace,gcp-method avworkspace-methods avworkspaces,gcp-method avworkspace_clone,gcp-method avworkspace_name,gcp-method avworkspace_namespace,gcp-method
DRS (Data Repository Service) URL managementdrs drs_hub drs_nci_crdc
GCP platform class.gcp gcp gcp-class
Methods compatible with the GCP platform classavbackup avbackup,gcp-method avcopy avcopy,gcp-method avlist avlist,gcp-method avremove avremove,gcp-method avrestore avrestore,gcp-method avstorage avstorage,gcp-method gcp-methods
gsutil command line utility interface (DEFUNCT)gsutil-defunct gsutil_cat gsutil_exists gsutil_help gsutil_pipe gsutil_requesterpays gsutil_rsync gsutil_stat
Helper to check AnVIL environment is set up to work with GCPhas_avworkspace,gcp-method has_avworkspace-methods
Copy packages, folders, or files to or from google buckets.delocalize localize