Installation | Additional Setup | Use in the AnVIL cloud | Local use | Graphical interfaces | Working with Google cloud-based resources | Using gcloud_*() for account management | Using gsutil_*() for file and bucket management | Using av*() to work with AnVIL tables and data | Tables, reference data, and persistent files | Using avtable*() for accessing tables | Using avdata() for accessing Workspace Data | Using avstorage() and workspace files | Using avnotebooks*() for notebook management | Using avworkflows_*() for workflows | Using avworkspace_*() for workspaces | Session Info
This package is considered a duplicate. The official version of this package is found at:https://bioc.r-universe.dev/AnVILGCP
Package: AnVILGCP 1.7.3
AnVILGCP: The GCP R Client for the AnVIL
The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL platform. The package is designed to use the API calls from the AnVIL package. It coordinates AnVIL workspace functionality with native GCP tools.
Authors:
AnVILGCP_1.7.3.tar.gz
AnVILGCP_1.7.3.zip(r-4.7)AnVILGCP_1.7.3.zip(r-4.6)AnVILGCP_1.7.1.zip(r-4.5)
AnVILGCP_1.7.3.tgz(r-4.6-any)AnVILGCP_1.7.1.tgz(r-4.5-any)
AnVILGCP_1.7.3.tar.gz(r-4.7-any)AnVILGCP_1.7.3.tar.gz(r-4.6-any)
AnVILGCP_1.7.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
AnVILGCP/json (API)
| # Install 'AnVILGCP' in R: |
| install.packages('AnVILGCP', repos = c('https://link-ny.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bioconductor/anvilgcp/issues
On BioConductor:AnVILGCP-1.7.3(bioc 3.24)AnVILGCP-1.6.2(bioc 3.23)
softwareinfrastructurethirdpartyclientdataimportu24hg010263
Last updated from:d52ab2e170. Checks:7 OK, 2 FAIL. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 165 | ||
| source / vignettes | OK | 174 | ||
| linux-release-x86_64 | OK | 184 | ||
| macos-release-arm64 | OK | 83 | ||
| macos-oldrel-arm64 | FAIL | 59 | ||
| windows-devel | OK | 101 | ||
| windows-release | OK | 68 | ||
| windows-oldrel | FAIL | 50 | ||
| wasm-release | OK | 175 |
Exports:avbackupavcopyavdataavdata_importavdisksavfiles_backupavfiles_lsavfiles_restoreavfiles_rmavlistavnotebooksavnotebooks_delocalizeavnotebooks_localizeavremoveavrestoreavruntimeavruntimesavstorageavtableavtable_deleteavtable_delete_valuesavtable_importavtable_import_setavtable_import_statusavtable_pagedavtablesavworkflowavworkflow_configuration_getavworkflow_configuration_inputsavworkflow_configuration_outputsavworkflow_configuration_setavworkflow_configuration_templateavworkflow_configuration_updateavworkflow_filesavworkflow_infoavworkflow_jobsavworkflow_localizeavworkflow_nameavworkflow_namespaceavworkflow_runavworkflow_stopavworkflowsavworkspaceavworkspace_cloneavworkspace_nameavworkspace_namespaceavworkspacesdelocalizedrs_hubdrs_nci_crdcgcpgsutil_catgsutil_existsgsutil_helpgsutil_pipegsutil_requesterpaysgsutil_rsyncgsutil_stathas_avworkspacelocalize
Dependencies:AnVILBaseaskpassBiocBaseUtilsclicpp11curldplyrGCPtoolsgenericsgluehttrhttr2jsonlitelifecyclemagrittrmimeopensslpillarpkgconfigpurrrR6rappdirsrlangstringistringrsystibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Miscellaneous functions for interacting with AnVIL tables and files | av avdisks avfiles_backup avfiles_ls avfiles_restore avfiles_rm avruntime avruntimes avtable_import_status avtable_paged |
| Import data into the current workspace | avdata avdata_import |
| Notebook management | avnotebooks avnotebooks,gcp-method avnotebooks-methods avnotebooks_delocalize avnotebooks_delocalize,gcp-method avnotebooks_localize avnotebooks_localize,gcp-method |
| Methods that work with the primary datasets in the DATA tab | avtable avtable,gcp-method avtable-methods avtables avtables,gcp-method avtable_delete,gcp-method avtable_delete_values avtable_delete_values,gcp-method avtable_import avtable_import,gcp-method avtable_import_set avtable_import_set,gcp-method |
| Workflow configuration | avworkflow avworkflow_configurations avworkflow_configuration_get avworkflow_configuration_inputs avworkflow_configuration_outputs avworkflow_configuration_set avworkflow_configuration_template avworkflow_configuration_update avworkflow_name avworkflow_namespace print.avworkflow_configuration |
| AnVIL workflow methods | avworkflow-methods avworkflow_jobs,gcp-method |
| Workflow submissions and file outputs | avworkflows avworkflow_files avworkflow_info avworkflow_localize avworkflow_run avworkflow_stop |
| AnVIL Workspace GCP methods | avworkspace,gcp-method avworkspace-methods avworkspaces,gcp-method avworkspace_clone,gcp-method avworkspace_name,gcp-method avworkspace_namespace,gcp-method |
| DRS (Data Repository Service) URL management | drs drs_hub drs_nci_crdc |
| GCP platform class | .gcp gcp gcp-class |
| Methods compatible with the GCP platform class | avbackup avbackup,gcp-method avcopy avcopy,gcp-method avlist avlist,gcp-method avremove avremove,gcp-method avrestore avrestore,gcp-method avstorage avstorage,gcp-method gcp-methods |
| gsutil command line utility interface (DEFUNCT) | gsutil-defunct gsutil_cat gsutil_exists gsutil_help gsutil_pipe gsutil_requesterpays gsutil_rsync gsutil_stat |
| Helper to check AnVIL environment is set up to work with GCP | has_avworkspace,gcp-method has_avworkspace-methods |
| Copy packages, folders, or files to or from google buckets. | delocalize localize |
