Package: curatedTCGAData 1.29.1
curatedTCGAData: Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
This package provides publicly available data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects. MultiAssayExperiment integrates multiple assays (e.g., RNA-seq, copy number, mutation, microRNA, protein, and others) with clinical / pathological data. It also links assay barcodes with patient identifiers, enabling harmonized subsetting of rows (features) and columns (patients / samples) across the entire multi-'omics experiment.
Authors:
curatedTCGAData_1.29.1.tar.gz
curatedTCGAData_1.29.1.zip(r-4.5)curatedTCGAData_1.29.1.zip(r-4.4)curatedTCGAData_1.29.1.zip(r-4.3)
curatedTCGAData_1.29.1.tgz(r-4.4-any)curatedTCGAData_1.29.1.tgz(r-4.3-any)
curatedTCGAData_1.29.1.tar.gz(r-4.5-noble)curatedTCGAData_1.29.1.tar.gz(r-4.4-noble)
curatedTCGAData_1.29.1.tgz(r-4.4-emscripten)curatedTCGAData_1.29.1.tgz(r-4.3-emscripten)
curatedTCGAData.pdf |curatedTCGAData.html✨
curatedTCGAData/json (API)
NEWS
| # Install 'curatedTCGAData' in R: |
| install.packages('curatedTCGAData', repos = c('https://link-ny.r-universe.dev', 'https://cloud.r-project.org')) |
The latest version of this package failed to build. Look at thebuild logs for more information.
Bug tracker:https://github.com/waldronlab/curatedtcgadata/issues
homo_sapiens_datareproducibleresearchcancerdataexperimenthubbioconductor-package
Last updated 6 days agofrom:66f250cf39. Checks:OK: 1 WARNING: 6. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 13 2024 |
| R-4.5-win | WARNING | Nov 13 2024 |
| R-4.5-linux | WARNING | Nov 13 2024 |
| R-4.4-win | WARNING | Nov 13 2024 |
| R-4.4-mac | WARNING | Nov 13 2024 |
| R-4.3-win | WARNING | Nov 13 2024 |
| R-4.3-mac | WARNING | Nov 13 2024 |
Exports:curatedTCGAData
Dependencies:abindAnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyrExperimentHubfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglueHDF5ArrayhttrIRangesjsonliteKEGGRESTlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeMultiAssayExperimentopensslpillarpkgconfigplogrpngpurrrR6rappdirsrhdf5rhdf5filtersRhdf5librlangRSQLiteS4ArraysS4VectorsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectoryamlzlibbioc
