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Package: oncoKBData 0.99.7

oncoKBData: A package to access the oncoKB web API

It provides access to the oncoKB API using the rapiclient and AnVIL R / Bioconductor packages. It allows access to both public and private APIs. Private API access requires a token obtained from https://www.oncokb.org.

Authors:Marcel Ramos [aut, cre]

oncoKBData_0.99.7.tar.gz
oncoKBData_0.99.7.zip(r-4.7)oncoKBData_0.99.7.zip(r-4.6)oncoKBData_0.99.7.zip(r-4.5)
oncoKBData_0.99.7.tgz(r-4.6-any)oncoKBData_0.99.7.tgz(r-4.5-any)
oncoKBData_0.99.7.tar.gz(r-4.7-any)oncoKBData_0.99.7.tar.gz(r-4.6-any)
oncoKBData_0.99.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
oncoKBData/json (API)

# Install 'oncoKBData' in R:

install.packages('oncoKBData', repos = c('https://link-ny.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/waldronlab/oncokbdata/issues

On CRAN:

infrastructure thirdpartyclient u24ca289073

2.70 score 1 stars 2 scripts 5 exports 74 dependencies

Last updated from:f6720bd209. Checks:7 NOTE, 2 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	NOTE	165
source / vignettes	OK	183
linux-release-x86_64	NOTE	139
macos-release-arm64	NOTE	111
macos-oldrel-arm64	NOTE	108
windows-devel	NOTE	120
windows-release	NOTE	101
windows-oldrel	NOTE	86
wasm-release	OK	154

Exports:cancerGeneList curatedGenes levelsOfEvidence oncoKB operations

Dependencies:AnVIL AnVILBase askpass base64enc BiocBaseUtils BiocGenerics bslib cachem cli commonmark cpp11 crosstalk curl digest dplyr DT evaluate fastmap filelock fontawesome formatR fs futile.logger futile.options GCPtools generics glue highr htmltools htmlwidgets httpuv httr httr2 jquerylib jsonlite keyring knitr lambda.r later lazyeval lifecycle magrittr memoise mime miniUI openssl otel pillar pkgconfig promises purrr R6 rapiclient rappdirs Rcpp rlang rmarkdown S4Vectors sass shiny sourcetools stringi stringr sys tibble tidyr tidyselect tinytex utf8 vctrs withr xfun xtable yaml

Accessing the OncoKB API with oncoKBData

Rendered fromoncoKBData.Rmdusingknitr::rmarkdown

Last update: 2025-05-07
Started: 2023-03-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Obtain the OncoKB cancer gene list	cancerGeneList
Get a table of curated oncogenes	curatedGenes
Get the Levels of Evidence Tables from OncoKB	levelsOfEvidence
The R interface to the oncoKB API Data Service	oncoKB
A class for representing the oncoKB API protocol	.oncoKB oncoKB-class operations,oncoKB-method