Package: oncoKBData 0.99.1

oncoKBData: A package to access the oncoKB web API

It provides access to the oncoKB API using the rapiclient and AnVIL R / Bioconductor packages. It allows access to both public and private APIs. Private API access requires a token obtained from https://www.oncokb.org.

Authors:Marcel Ramos [aut, cre]

oncoKBData_0.99.1.tar.gz
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oncoKBData_0.99.1.tgz(r-4.4-any)oncoKBData_0.99.1.tgz(r-4.3-any)
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oncoKBData.pdf |oncoKBData.html✨
oncoKBData/json (API)

# Install 'oncoKBData' in R:

install.packages('oncoKBData', repos = c('https://link-ny.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/waldronlab/oncokbdata/issues

On CRAN:

infrastructure thirdpartyclient

5 exports 1 stars 0.23 score 73 dependencies 2 scripts

Last updated 5 months agofrom:dd42368618. Checks:ERROR: 7. Indexed: no.

Target	Result	Date
Doc / Vignettes	FAIL	Sep 12 2024
R-4.5-win	ERROR	Sep 12 2024
R-4.5-linux	ERROR	Sep 12 2024
R-4.4-win	ERROR	Sep 12 2024
R-4.4-mac	ERROR	Sep 12 2024
R-4.3-win	ERROR	Sep 12 2024
R-4.3-mac	ERROR	Sep 12 2024

Exports:cancerGeneList curatedGenes levelsOfEvidence oncoKB operations

Dependencies:AnVIL AnVILBase askpass base64enc BiocBaseUtils BiocGenerics BiocManager bslib cachem cli commonmark cpp11 crayon crosstalk curl digest dplyr DT evaluate fansi fastmap fontawesome formatR fs futile.logger futile.options generics glue highr htmltools htmlwidgets httpuv httr httr2 jquerylib jsonlite knitr lambda.r later lazyeval lifecycle magrittr memoise mime miniUI openssl pillar pkgconfig promises purrr R6 rapiclient rappdirs Rcpp rlang rmarkdown S4Vectors sass shiny sourcetools stringi stringr sys tibble tidyr tidyselect tinytex utf8 vctrs withr xfun xtable yaml

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Obtain the OncoKB cancer gene list	cancerGeneList
Get a table of curated oncogenes	curatedGenes
Get the Levels of Evidence Tables from OncoKB	levelsOfEvidence
The R interface to the oncoKB API Data Service	oncoKB
A class for representing the oncoKB API protocol	.oncoKB oncoKB-class operations,oncoKB-method